miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 30749 0.67 0.82327
Target:  5'- aGGCGGCgGUGUaaaauUCGUGG--GCAUgCUGCg -3'
miRNA:   3'- -CCGCCG-UACG-----AGCACCagUGUA-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 31601 0.71 0.629215
Target:  5'- cGGCGcCGUGC-CGUGGgcggacCACAUgCGCg -3'
miRNA:   3'- -CCGCcGUACGaGCACCa-----GUGUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 33458 0.67 0.839178
Target:  5'- cGCGGCcgGC-CaGUGGUCgaaagugGCGcgCCGCg -3'
miRNA:   3'- cCGCCGuaCGaG-CACCAG-------UGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 35683 0.68 0.814641
Target:  5'- gGGCGGCcaGCacCGUGGcCGCGUcauacuuggCCGCa -3'
miRNA:   3'- -CCGCCGuaCGa-GCACCaGUGUA---------GGCG- -5'
6730 5' -56.1 NC_001875.2 + 37234 0.75 0.424389
Target:  5'- cGGCGGUGUcguccGCcaaacacagCGUGGcCGCGUCCGCg -3'
miRNA:   3'- -CCGCCGUA-----CGa--------GCACCaGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 37355 0.66 0.892221
Target:  5'- cGCGGCcgcgcGCUCGUGcGaacgCGCGcgCCGCu -3'
miRNA:   3'- cCGCCGua---CGAGCAC-Ca---GUGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 37614 0.72 0.555864
Target:  5'- cGGCGGCGUGCUCGccgacgacaUGGggcucggcaagaCGCuGUCCGUc -3'
miRNA:   3'- -CCGCCGUACGAGC---------ACCa-----------GUG-UAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 38324 0.72 0.547838
Target:  5'- cGGCGGCAUGCaagacgugcUGUGGUUGCugugUCGCu -3'
miRNA:   3'- -CCGCCGUACGa--------GCACCAGUGua--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 39173 0.67 0.848079
Target:  5'- aGGCgGGCcgGCgguugCGUGGcguUUACGgugcgCCGCu -3'
miRNA:   3'- -CCG-CCGuaCGa----GCACC---AGUGUa----GGCG- -5'
6730 5' -56.1 NC_001875.2 + 39324 0.66 0.878374
Target:  5'- cGGCGGCGUGCgcgCGcugcaGG-CGCAgccugaCGCu -3'
miRNA:   3'- -CCGCCGUACGa--GCa----CCaGUGUag----GCG- -5'
6730 5' -56.1 NC_001875.2 + 40209 0.7 0.709658
Target:  5'- uGCGGCGUGUugUCGagcacuaUGGUCACGUCa-- -3'
miRNA:   3'- cCGCCGUACG--AGC-------ACCAGUGUAGgcg -5'
6730 5' -56.1 NC_001875.2 + 40810 0.73 0.527941
Target:  5'- cGGCGcuuGCGUGUUguUGGUCGgGUCCGCc -3'
miRNA:   3'- -CCGC---CGUACGAgcACCAGUgUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 42183 0.67 0.831725
Target:  5'- gGGCGGCAga-UCGUGGUgccgguuaACGggcCCGCc -3'
miRNA:   3'- -CCGCCGUacgAGCACCAg-------UGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 42223 0.66 0.878374
Target:  5'- uGGuCGGCGacgcGCUCGUG--CACGUgCGCg -3'
miRNA:   3'- -CC-GCCGUa---CGAGCACcaGUGUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 42360 0.68 0.787788
Target:  5'- aGCGGCAUGCUCGcGuccaugcacacGUCGacaGUCuCGCu -3'
miRNA:   3'- cCGCCGUACGAGCaC-----------CAGUg--UAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 42762 0.73 0.498623
Target:  5'- aGCGGCGcGCUCG-GGUCGgcCGUgCGCa -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGU--GUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 43240 0.68 0.805846
Target:  5'- uGCGGCGaGUUCGaGGUCGUGUCCaGCc -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGUGUAGG-CG- -5'
6730 5' -56.1 NC_001875.2 + 43315 0.75 0.433311
Target:  5'- cGGCGcGCGcGCgggucggCGUGGUUGCcgCCGCg -3'
miRNA:   3'- -CCGC-CGUaCGa------GCACCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 47825 0.72 0.588273
Target:  5'- cGCGGCGcGC-CGcGGcCGCGUCCGUg -3'
miRNA:   3'- cCGCCGUaCGaGCaCCaGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 49743 0.67 0.82327
Target:  5'- uGGUGGUAgcGCUCGUcGGcgCGCAgCUGCu -3'
miRNA:   3'- -CCGCCGUa-CGAGCA-CCa-GUGUaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.