miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 240 0.67 0.863646
Target:  5'- cGGCGGCGgaucggGCggcgCGUcauuGGUguCGUUCGCc -3'
miRNA:   3'- -CCGCCGUa-----CGa---GCA----CCAguGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 52062 0.67 0.855964
Target:  5'- cGGCGGCAUcacCUCGU--UCACG-CCGUu -3'
miRNA:   3'- -CCGCCGUAc--GAGCAccAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 92015 0.67 0.855964
Target:  5'- uGGCGGCGuuUGCguacuuugCGaagGGcCACG-CCGCg -3'
miRNA:   3'- -CCGCCGU--ACGa-------GCa--CCaGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 118364 0.67 0.85362
Target:  5'- cGGCGGCccGCUguacgagugcgaccUGUgcaaGGagGCGUCCGCc -3'
miRNA:   3'- -CCGCCGuaCGA--------------GCA----CCagUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 13308 0.67 0.848079
Target:  5'- cGGCGacgccuaccGCGUGgUCGU-GUCGCcgCUGCa -3'
miRNA:   3'- -CCGC---------CGUACgAGCAcCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 83220 0.67 0.82327
Target:  5'- gGGCuGCGUGUUggugcUGUGGUCcuACGgcagCCGCg -3'
miRNA:   3'- -CCGcCGUACGA-----GCACCAG--UGUa---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 15970 0.67 0.839997
Target:  5'- cGCGGCAcgcUGUUgGUGGU-GCAguacCCGCc -3'
miRNA:   3'- cCGCCGU---ACGAgCACCAgUGUa---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 42183 0.67 0.831725
Target:  5'- gGGCGGCAga-UCGUGGUgccgguuaACGggcCCGCc -3'
miRNA:   3'- -CCGCCGUacgAGCACCAg-------UGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 280 0.67 0.82327
Target:  5'- uGGCGucgccGCAUGCUgGccaGGUCcagcaccuCGUCCGCg -3'
miRNA:   3'- -CCGC-----CGUACGAgCa--CCAGu-------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 4307 0.67 0.82327
Target:  5'- cGCGGUcuugcauuuuGUGCaCGUGaUCACGUUCGCc -3'
miRNA:   3'- cCGCCG----------UACGaGCACcAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 95921 0.67 0.82327
Target:  5'- cGCgGGCAUGCUCGaGGacaaggaccggCGCAUCCa- -3'
miRNA:   3'- cCG-CCGUACGAGCaCCa----------GUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 33458 0.67 0.839178
Target:  5'- cGCGGCcgGC-CaGUGGUCgaaagugGCGcgCCGCg -3'
miRNA:   3'- cCGCCGuaCGaG-CACCAG-------UGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 39173 0.67 0.848079
Target:  5'- aGGCgGGCcgGCgguugCGUGGcguUUACGgugcgCCGCu -3'
miRNA:   3'- -CCG-CCGuaCGa----GCACC---AGUGUa----GGCG- -5'
6730 5' -56.1 NC_001875.2 + 73640 0.67 0.831725
Target:  5'- aGGuCGcCAUGCUCGUcGGaCGCGUCgGUg -3'
miRNA:   3'- -CC-GCcGUACGAGCA-CCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 61795 0.68 0.814641
Target:  5'- aGCGGCGUGUcgCG-GGcCACGUuaGCg -3'
miRNA:   3'- cCGCCGUACGa-GCaCCaGUGUAggCG- -5'
6730 5' -56.1 NC_001875.2 + 43240 0.68 0.805846
Target:  5'- uGCGGCGaGUUCGaGGUCGUGUCCaGCc -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGUGUAGG-CG- -5'
6730 5' -56.1 NC_001875.2 + 68565 0.68 0.769168
Target:  5'- cGGCGGCGgucGCgcaccgCGUGGcgcCGCuggCCGCc -3'
miRNA:   3'- -CCGCCGUa--CGa-----GCACCa--GUGua-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 30222 0.68 0.78687
Target:  5'- uGUGGCGaccacuuUGUaCGUGGUCGCGUUgaCGCu -3'
miRNA:   3'- cCGCCGU-------ACGaGCACCAGUGUAG--GCG- -5'
6730 5' -56.1 NC_001875.2 + 42360 0.68 0.787788
Target:  5'- aGCGGCAUGCUCGcGuccaugcacacGUCGacaGUCuCGCu -3'
miRNA:   3'- cCGCCGUACGAGCaC-----------CAGUg--UAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 69006 0.68 0.787788
Target:  5'- cGGgGGCAaGCaCGUGGUgGCGcgCUGCc -3'
miRNA:   3'- -CCgCCGUaCGaGCACCAgUGUa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.