miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 93191 0.71 0.608709
Target:  5'- cGGCGcuGCAauUGCUCGUGGUUguGCAguUgCGCg -3'
miRNA:   3'- -CCGC--CGU--ACGAGCACCAG--UGU--AgGCG- -5'
6730 5' -56.1 NC_001875.2 + 20848 0.71 0.608709
Target:  5'- uGGCGGCG-GCUUG-GuGUCACGgcgCUGCu -3'
miRNA:   3'- -CCGCCGUaCGAGCaC-CAGUGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 31601 0.71 0.629215
Target:  5'- cGGCGcCGUGC-CGUGGgcggacCACAUgCGCg -3'
miRNA:   3'- -CCGCcGUACGaGCACCa-----GUGUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 82643 0.71 0.639475
Target:  5'- gGGCGGCggGC-CGUGGUgcaACAUgCgGCg -3'
miRNA:   3'- -CCGCCGuaCGaGCACCAg--UGUA-GgCG- -5'
6730 5' -56.1 NC_001875.2 + 1885 0.7 0.680374
Target:  5'- cGGCGGCGgcgGCgCGaccgGuGUCGCGcCCGCa -3'
miRNA:   3'- -CCGCCGUa--CGaGCa---C-CAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 128785 0.7 0.680374
Target:  5'- cGGCGGCGguugGauggCGUGGgCGCGUUgGCg -3'
miRNA:   3'- -CCGCCGUa---Cga--GCACCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 124573 0.7 0.699612
Target:  5'- uGGCGGCAcaccguuugcuccUGCUCGUaGUUAaacCCGCu -3'
miRNA:   3'- -CCGCCGU-------------ACGAGCAcCAGUguaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 49792 0.7 0.700619
Target:  5'- cGGCGGCc-GCUCGU-GUCGCcgCUGg -3'
miRNA:   3'- -CCGCCGuaCGAGCAcCAGUGuaGGCg -5'
6730 5' -56.1 NC_001875.2 + 40209 0.7 0.709658
Target:  5'- uGCGGCGUGUugUCGagcacuaUGGUCACGUCa-- -3'
miRNA:   3'- cCGCCGUACG--AGC-------ACCAGUGUAGgcg -5'
6730 5' -56.1 NC_001875.2 + 65842 0.7 0.710659
Target:  5'- cGGcCGGCGUGaUCGUgcugaucgggcuGGUCGCGUuuGUg -3'
miRNA:   3'- -CC-GCCGUACgAGCA------------CCAGUGUAggCG- -5'
6730 5' -56.1 NC_001875.2 + 4427 0.69 0.717648
Target:  5'- cGGCGGCAUGCUgacgCGcgccgccagcacuuUGGcCAggcucugagcgcCGUCCGCg -3'
miRNA:   3'- -CCGCCGUACGA----GC--------------ACCaGU------------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 15496 0.69 0.720633
Target:  5'- cGCGGCGuuguucgggcuuUGCUCGU--UCGCGUUCGUg -3'
miRNA:   3'- cCGCCGU------------ACGAGCAccAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 5102 0.69 0.740341
Target:  5'- gGGCuGCGcGCgcuaaucgaCGgaaaGGUCACGUCCGCg -3'
miRNA:   3'- -CCGcCGUaCGa--------GCa---CCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 113903 0.69 0.740341
Target:  5'- cGGCGGC-UGCUCGUuucgcugguggGaGUCGCucAUCgGCu -3'
miRNA:   3'- -CCGCCGuACGAGCA-----------C-CAGUG--UAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 90521 0.69 0.740341
Target:  5'- cGCGGCGUGUcuugUGUGGUCuGCG-CCGg -3'
miRNA:   3'- cCGCCGUACGa---GCACCAG-UGUaGGCg -5'
6730 5' -56.1 NC_001875.2 + 85594 0.69 0.740341
Target:  5'- cGGUGuccgaCGUGgaUGUGGaCACGUCCGCg -3'
miRNA:   3'- -CCGCc----GUACgaGCACCaGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 90937 0.69 0.740341
Target:  5'- aGCGGCGUGgUCGUG--CACG-CCGUa -3'
miRNA:   3'- cCGCCGUACgAGCACcaGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 120187 0.69 0.740341
Target:  5'- cGGCcGCgucgGUGUUUGUGGUCGCG-CCGg -3'
miRNA:   3'- -CCGcCG----UACGAGCACCAGUGUaGGCg -5'
6730 5' -56.1 NC_001875.2 + 68565 0.68 0.769168
Target:  5'- cGGCGGCGgucGCgcaccgCGUGGcgcCGCuggCCGCc -3'
miRNA:   3'- -CCGCCGUa--CGa-----GCACCa--GUGua-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 30222 0.68 0.78687
Target:  5'- uGUGGCGaccacuuUGUaCGUGGUCGCGUUgaCGCu -3'
miRNA:   3'- cCGCCGU-------ACGaGCACCAGUGUAG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.