Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 42762 | 0.73 | 0.498623 |
Target: 5'- aGCGGCGcGCUCG-GGUCGgcCGUgCGCa -3' miRNA: 3'- cCGCCGUaCGAGCaCCAGU--GUAgGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 38324 | 0.72 | 0.547838 |
Target: 5'- cGGCGGCAUGCaagacgugcUGUGGUUGCugugUCGCu -3' miRNA: 3'- -CCGCCGUACGa--------GCACCAGUGua--GGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 25918 | 0.72 | 0.547838 |
Target: 5'- aGCGGCcaAUGCccgaguuuuUCGUGGUgGCG-CCGCg -3' miRNA: 3'- cCGCCG--UACG---------AGCACCAgUGUaGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 37614 | 0.72 | 0.555864 |
Target: 5'- cGGCGGCGUGCUCGccgacgacaUGGggcucggcaagaCGCuGUCCGUc -3' miRNA: 3'- -CCGCCGUACGAGC---------ACCa-----------GUG-UAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 8461 | 0.71 | 0.608709 |
Target: 5'- uGCGG-GUGCU--UGGUCACGUCgCGCg -3' miRNA: 3'- cCGCCgUACGAgcACCAGUGUAG-GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 31601 | 0.71 | 0.629215 |
Target: 5'- cGGCGcCGUGC-CGUGGgcggacCACAUgCGCg -3' miRNA: 3'- -CCGCcGUACGaGCACCa-----GUGUAgGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 124573 | 0.7 | 0.699612 |
Target: 5'- uGGCGGCAcaccguuugcuccUGCUCGUaGUUAaacCCGCu -3' miRNA: 3'- -CCGCCGU-------------ACGAGCAcCAGUguaGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 69006 | 0.68 | 0.787788 |
Target: 5'- cGGgGGCAaGCaCGUGGUgGCGcgCUGCc -3' miRNA: 3'- -CCgCCGUaCGaGCACCAgUGUa-GGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 42360 | 0.68 | 0.787788 |
Target: 5'- aGCGGCAUGCUCGcGuccaugcacacGUCGacaGUCuCGCu -3' miRNA: 3'- cCGCCGUACGAGCaC-----------CAGUg--UAG-GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 30222 | 0.68 | 0.78687 |
Target: 5'- uGUGGCGaccacuuUGUaCGUGGUCGCGUUgaCGCu -3' miRNA: 3'- cCGCCGU-------ACGaGCACCAGUGUAG--GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 68565 | 0.68 | 0.769168 |
Target: 5'- cGGCGGCGgucGCgcaccgCGUGGcgcCGCuggCCGCc -3' miRNA: 3'- -CCGCCGUa--CGa-----GCACCa--GUGua-GGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 5102 | 0.69 | 0.740341 |
Target: 5'- gGGCuGCGcGCgcuaaucgaCGgaaaGGUCACGUCCGCg -3' miRNA: 3'- -CCGcCGUaCGa--------GCa---CCAGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 4427 | 0.69 | 0.717648 |
Target: 5'- cGGCGGCAUGCUgacgCGcgccgccagcacuuUGGcCAggcucugagcgcCGUCCGCg -3' miRNA: 3'- -CCGCCGUACGA----GC--------------ACCaGU------------GUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 70366 | 0.74 | 0.460716 |
Target: 5'- cGGCGGCGccucggGCgcccaGUGGUCGCcgUCGCc -3' miRNA: 3'- -CCGCCGUa-----CGag---CACCAGUGuaGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 37234 | 0.75 | 0.424389 |
Target: 5'- cGGCGGUGUcguccGCcaaacacagCGUGGcCGCGUCCGCg -3' miRNA: 3'- -CCGCCGUA-----CGa--------GCACCaGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 54366 | 0.78 | 0.277559 |
Target: 5'- cGGCGGCAacgGCUCG-GGUCugGUgCCGa -3' miRNA: 3'- -CCGCCGUa--CGAGCaCCAGugUA-GGCg -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 2011 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 2062 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 1924 | 1.13 | 0.001373 |
Target: 5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3' miRNA: 3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 78482 | 0.66 | 0.898802 |
Target: 5'- cGGUGcGCGUGUUUuUGGcgCACGUCgUGCg -3' miRNA: 3'- -CCGC-CGUACGAGcACCa-GUGUAG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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