miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 33458 0.67 0.839178
Target:  5'- cGCGGCcgGC-CaGUGGUCgaaagugGCGcgCCGCg -3'
miRNA:   3'- cCGCCGuaCGaG-CACCAG-------UGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 30222 0.68 0.78687
Target:  5'- uGUGGCGaccacuuUGUaCGUGGUCGCGUUgaCGCu -3'
miRNA:   3'- cCGCCGU-------ACGaGCACCAGUGUAG--GCG- -5'
6730 5' -56.1 NC_001875.2 + 42360 0.68 0.787788
Target:  5'- aGCGGCAUGCUCGcGuccaugcacacGUCGacaGUCuCGCu -3'
miRNA:   3'- cCGCCGUACGAGCaC-----------CAGUg--UAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 69006 0.68 0.787788
Target:  5'- cGGgGGCAaGCaCGUGGUgGCGcgCUGCc -3'
miRNA:   3'- -CCgCCGUaCGaGCACCAgUGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 29340 0.68 0.796892
Target:  5'- uGCGGCGcccaccGCUUGUGGUC-CGuuUCCGg -3'
miRNA:   3'- cCGCCGUa-----CGAGCACCAGuGU--AGGCg -5'
6730 5' -56.1 NC_001875.2 + 50009 0.68 0.805846
Target:  5'- cGCGGUugggGCgcgCGUGGUCGCcgggCgGCg -3'
miRNA:   3'- cCGCCGua--CGa--GCACCAGUGua--GgCG- -5'
6730 5' -56.1 NC_001875.2 + 280 0.67 0.82327
Target:  5'- uGGCGucgccGCAUGCUgGccaGGUCcagcaccuCGUCCGCg -3'
miRNA:   3'- -CCGC-----CGUACGAgCa--CCAGu-------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 4307 0.67 0.82327
Target:  5'- cGCGGUcuugcauuuuGUGCaCGUGaUCACGUUCGCc -3'
miRNA:   3'- cCGCCG----------UACGaGCACcAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 95921 0.67 0.82327
Target:  5'- cGCgGGCAUGCUCGaGGacaaggaccggCGCAUCCa- -3'
miRNA:   3'- cCG-CCGUACGAGCaCCa----------GUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 68565 0.68 0.769168
Target:  5'- cGGCGGCGgucGCgcaccgCGUGGcgcCGCuggCCGCc -3'
miRNA:   3'- -CCGCCGUa--CGa-----GCACCa--GUGua-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 5102 0.69 0.740341
Target:  5'- gGGCuGCGcGCgcuaaucgaCGgaaaGGUCACGUCCGCg -3'
miRNA:   3'- -CCGcCGUaCGa--------GCa---CCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 4427 0.69 0.717648
Target:  5'- cGGCGGCAUGCUgacgCGcgccgccagcacuuUGGcCAggcucugagcgcCGUCCGCg -3'
miRNA:   3'- -CCGCCGUACGA----GC--------------ACCaGU------------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 43315 0.75 0.433311
Target:  5'- cGGCGcGCGcGCgggucggCGUGGUUGCcgCCGCg -3'
miRNA:   3'- -CCGC-CGUaCGa------GCACCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 42762 0.73 0.498623
Target:  5'- aGCGGCGcGCUCG-GGUCGgcCGUgCGCa -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGU--GUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 38324 0.72 0.547838
Target:  5'- cGGCGGCAUGCaagacgugcUGUGGUUGCugugUCGCu -3'
miRNA:   3'- -CCGCCGUACGa--------GCACCAGUGua--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 25918 0.72 0.547838
Target:  5'- aGCGGCcaAUGCccgaguuuuUCGUGGUgGCG-CCGCg -3'
miRNA:   3'- cCGCCG--UACG---------AGCACCAgUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 37614 0.72 0.555864
Target:  5'- cGGCGGCGUGCUCGccgacgacaUGGggcucggcaagaCGCuGUCCGUc -3'
miRNA:   3'- -CCGCCGUACGAGC---------ACCa-----------GUG-UAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 8461 0.71 0.608709
Target:  5'- uGCGG-GUGCU--UGGUCACGUCgCGCg -3'
miRNA:   3'- cCGCCgUACGAgcACCAGUGUAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 31601 0.71 0.629215
Target:  5'- cGGCGcCGUGC-CGUGGgcggacCACAUgCGCg -3'
miRNA:   3'- -CCGCcGUACGaGCACCa-----GUGUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 124573 0.7 0.699612
Target:  5'- uGGCGGCAcaccguuugcuccUGCUCGUaGUUAaacCCGCu -3'
miRNA:   3'- -CCGCCGU-------------ACGAGCAcCAGUguaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.