Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 1972 | 1.13 | 0.001373 |
Target: 5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3' miRNA: 3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 1885 | 0.7 | 0.680374 |
Target: 5'- cGGCGGCGgcgGCgCGaccgGuGUCGCGcCCGCa -3' miRNA: 3'- -CCGCCGUa--CGaGCa---C-CAGUGUaGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 40209 | 0.7 | 0.709658 |
Target: 5'- uGCGGCGUGUugUCGagcacuaUGGUCACGUCa-- -3' miRNA: 3'- cCGCCGUACG--AGC-------ACCAGUGUAGgcg -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 78482 | 0.66 | 0.898802 |
Target: 5'- cGGUGcGCGUGUUUuUGGcgCACGUCgUGCg -3' miRNA: 3'- -CCGC-CGUACGAGcACCa-GUGUAG-GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 54366 | 0.78 | 0.277559 |
Target: 5'- cGGCGGCAacgGCUCG-GGUCugGUgCCGa -3' miRNA: 3'- -CCGCCGUa--CGAGCaCCAGugUA-GGCg -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 37234 | 0.75 | 0.424389 |
Target: 5'- cGGCGGUGUcguccGCcaaacacagCGUGGcCGCGUCCGCg -3' miRNA: 3'- -CCGCCGUA-----CGa--------GCACCaGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 77672 | 0.74 | 0.460716 |
Target: 5'- uGGCGGuCGUGCgCGUgacGGUCACGUCguuggaCGCg -3' miRNA: 3'- -CCGCC-GUACGaGCA---CCAGUGUAG------GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 40810 | 0.73 | 0.527941 |
Target: 5'- cGGCGcuuGCGUGUUguUGGUCGgGUCCGCc -3' miRNA: 3'- -CCGC---CGUACGAgcACCAGUgUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 98595 | 0.72 | 0.578099 |
Target: 5'- cGCGGUAgcGCUCGUGGcugagcuggCGCucGUCCGCu -3' miRNA: 3'- cCGCCGUa-CGAGCACCa--------GUG--UAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 128785 | 0.7 | 0.680374 |
Target: 5'- cGGCGGCGguugGauggCGUGGgCGCGUUgGCg -3' miRNA: 3'- -CCGCCGUa---Cga--GCACCaGUGUAGgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 93191 | 0.71 | 0.608709 |
Target: 5'- cGGCGcuGCAauUGCUCGUGGUUguGCAguUgCGCg -3' miRNA: 3'- -CCGC--CGU--ACGAGCACCAG--UGU--AgGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 113364 | 0.72 | 0.577084 |
Target: 5'- cGGCGcucaaacGCAUGCUgGUGGgCACGUCgcagCGCg -3' miRNA: 3'- -CCGC-------CGUACGAgCACCaGUGUAG----GCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 1924 | 1.13 | 0.001373 |
Target: 5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3' miRNA: 3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 20848 | 0.71 | 0.608709 |
Target: 5'- uGGCGGCG-GCUUG-GuGUCACGgcgCUGCu -3' miRNA: 3'- -CCGCCGUaCGAGCaC-CAGUGUa--GGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 2062 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 87882 | 0.72 | 0.567965 |
Target: 5'- uGGCGGCGaguUGUcCGcGGuUUGCGUCCGCg -3' miRNA: 3'- -CCGCCGU---ACGaGCaCC-AGUGUAGGCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 82643 | 0.71 | 0.639475 |
Target: 5'- gGGCGGCggGC-CGUGGUgcaACAUgCgGCg -3' miRNA: 3'- -CCGCCGuaCGaGCACCAg--UGUA-GgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 49792 | 0.7 | 0.700619 |
Target: 5'- cGGCGGCc-GCUCGU-GUCGCcgCUGg -3' miRNA: 3'- -CCGCCGuaCGAGCAcCAGUGuaGGCg -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 2011 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
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6730 | 5' | -56.1 | NC_001875.2 | + | 70366 | 0.74 | 0.460716 |
Target: 5'- cGGCGGCGccucggGCgcccaGUGGUCGCcgUCGCc -3' miRNA: 3'- -CCGCCGUa-----CGag---CACCAGUGuaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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