miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 1972 1.13 0.001373
Target:  5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3'
miRNA:   3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 1924 1.13 0.001373
Target:  5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3'
miRNA:   3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 2011 0.85 0.109095
Target:  5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3'
miRNA:   3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 2062 0.85 0.109095
Target:  5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3'
miRNA:   3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 28811 0.79 0.240443
Target:  5'- cGCGGCAaacgggGCaCGUGGUCACGcCCGCa -3'
miRNA:   3'- cCGCCGUa-----CGaGCACCAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 54366 0.78 0.277559
Target:  5'- cGGCGGCAacgGCUCG-GGUCugGUgCCGa -3'
miRNA:   3'- -CCGCCGUa--CGAGCaCCAGugUA-GGCg -5'
6730 5' -56.1 NC_001875.2 + 37234 0.75 0.424389
Target:  5'- cGGCGGUGUcguccGCcaaacacagCGUGGcCGCGUCCGCg -3'
miRNA:   3'- -CCGCCGUA-----CGa--------GCACCaGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 43315 0.75 0.433311
Target:  5'- cGGCGcGCGcGCgggucggCGUGGUUGCcgCCGCg -3'
miRNA:   3'- -CCGC-CGUaCGa------GCACCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 70366 0.74 0.460716
Target:  5'- cGGCGGCGccucggGCgcccaGUGGUCGCcgUCGCc -3'
miRNA:   3'- -CCGCCGUa-----CGag---CACCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 77672 0.74 0.460716
Target:  5'- uGGCGGuCGUGCgCGUgacGGUCACGUCguuggaCGCg -3'
miRNA:   3'- -CCGCC-GUACGaGCA---CCAGUGUAG------GCG- -5'
6730 5' -56.1 NC_001875.2 + 42762 0.73 0.498623
Target:  5'- aGCGGCGcGCUCG-GGUCGgcCGUgCGCa -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGU--GUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 40810 0.73 0.527941
Target:  5'- cGGCGcuuGCGUGUUguUGGUCGgGUCCGCc -3'
miRNA:   3'- -CCGC---CGUACGAgcACCAGUgUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 38324 0.72 0.547838
Target:  5'- cGGCGGCAUGCaagacgugcUGUGGUUGCugugUCGCu -3'
miRNA:   3'- -CCGCCGUACGa--------GCACCAGUGua--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 25918 0.72 0.547838
Target:  5'- aGCGGCcaAUGCccgaguuuuUCGUGGUgGCG-CCGCg -3'
miRNA:   3'- cCGCCG--UACG---------AGCACCAgUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 37614 0.72 0.555864
Target:  5'- cGGCGGCGUGCUCGccgacgacaUGGggcucggcaagaCGCuGUCCGUc -3'
miRNA:   3'- -CCGCCGUACGAGC---------ACCa-----------GUG-UAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 87882 0.72 0.567965
Target:  5'- uGGCGGCGaguUGUcCGcGGuUUGCGUCCGCg -3'
miRNA:   3'- -CCGCCGU---ACGaGCaCC-AGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 113364 0.72 0.577084
Target:  5'- cGGCGcucaaacGCAUGCUgGUGGgCACGUCgcagCGCg -3'
miRNA:   3'- -CCGC-------CGUACGAgCACCaGUGUAG----GCG- -5'
6730 5' -56.1 NC_001875.2 + 98595 0.72 0.578099
Target:  5'- cGCGGUAgcGCUCGUGGcugagcuggCGCucGUCCGCu -3'
miRNA:   3'- cCGCCGUa-CGAGCACCa--------GUG--UAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 47825 0.72 0.588273
Target:  5'- cGCGGCGcGC-CGcGGcCGCGUCCGUg -3'
miRNA:   3'- cCGCCGUaCGaGCaCCaGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 8461 0.71 0.608709
Target:  5'- uGCGG-GUGCU--UGGUCACGUCgCGCg -3'
miRNA:   3'- cCGCCgUACGAgcACCAGUGUAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.