miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 13308 0.67 0.848079
Target:  5'- cGGCGacgccuaccGCGUGgUCGU-GUCGCcgCUGCa -3'
miRNA:   3'- -CCGC---------CGUACgAGCAcCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 39173 0.67 0.848079
Target:  5'- aGGCgGGCcgGCgguugCGUGGcguUUACGgugcgCCGCu -3'
miRNA:   3'- -CCG-CCGuaCGa----GCACC---AGUGUa----GGCG- -5'
6730 5' -56.1 NC_001875.2 + 97831 0.67 0.848079
Target:  5'- uGGUGGCGcuuUGUUCGUugccGUCGgCGUCgCGCa -3'
miRNA:   3'- -CCGCCGU---ACGAGCAc---CAGU-GUAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 15970 0.67 0.839997
Target:  5'- cGCGGCAcgcUGUUgGUGGU-GCAguacCCGCc -3'
miRNA:   3'- cCGCCGU---ACGAgCACCAgUGUa---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 33458 0.67 0.839178
Target:  5'- cGCGGCcgGC-CaGUGGUCgaaagugGCGcgCCGCg -3'
miRNA:   3'- cCGCCGuaCGaG-CACCAG-------UGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 73640 0.67 0.831725
Target:  5'- aGGuCGcCAUGCUCGUcGGaCGCGUCgGUg -3'
miRNA:   3'- -CC-GCcGUACGAGCA-CCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 42183 0.67 0.831725
Target:  5'- gGGCGGCAga-UCGUGGUgccgguuaACGggcCCGCc -3'
miRNA:   3'- -CCGCCGUacgAGCACCAg-------UGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 49743 0.67 0.82327
Target:  5'- uGGUGGUAgcGCUCGUcGGcgCGCAgCUGCu -3'
miRNA:   3'- -CCGCCGUa-CGAGCA-CCa-GUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 83220 0.67 0.82327
Target:  5'- gGGCuGCGUGUUggugcUGUGGUCcuACGgcagCCGCg -3'
miRNA:   3'- -CCGcCGUACGA-----GCACCAG--UGUa---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 30749 0.67 0.82327
Target:  5'- aGGCGGCgGUGUaaaauUCGUGG--GCAUgCUGCg -3'
miRNA:   3'- -CCGCCG-UACG-----AGCACCagUGUA-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 95921 0.67 0.82327
Target:  5'- cGCgGGCAUGCUCGaGGacaaggaccggCGCAUCCa- -3'
miRNA:   3'- cCG-CCGUACGAGCaCCa----------GUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 90242 0.67 0.82327
Target:  5'- aGGUGGU--GCUCGUcGGUCACcggguuGUCCa- -3'
miRNA:   3'- -CCGCCGuaCGAGCA-CCAGUG------UAGGcg -5'
6730 5' -56.1 NC_001875.2 + 280 0.67 0.82327
Target:  5'- uGGCGucgccGCAUGCUgGccaGGUCcagcaccuCGUCCGCg -3'
miRNA:   3'- -CCGC-----CGUACGAgCa--CCAGu-------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 4307 0.67 0.82327
Target:  5'- cGCGGUcuugcauuuuGUGCaCGUGaUCACGUUCGCc -3'
miRNA:   3'- cCGCCG----------UACGaGCACcAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 61795 0.68 0.814641
Target:  5'- aGCGGCGUGUcgCG-GGcCACGUuaGCg -3'
miRNA:   3'- cCGCCGUACGa-GCaCCaGUGUAggCG- -5'
6730 5' -56.1 NC_001875.2 + 35683 0.68 0.814641
Target:  5'- gGGCGGCcaGCacCGUGGcCGCGUcauacuuggCCGCa -3'
miRNA:   3'- -CCGCCGuaCGa-GCACCaGUGUA---------GGCG- -5'
6730 5' -56.1 NC_001875.2 + 43240 0.68 0.805846
Target:  5'- uGCGGCGaGUUCGaGGUCGUGUCCaGCc -3'
miRNA:   3'- cCGCCGUaCGAGCaCCAGUGUAGG-CG- -5'
6730 5' -56.1 NC_001875.2 + 50009 0.68 0.805846
Target:  5'- cGCGGUugggGCgcgCGUGGUCGCcgggCgGCg -3'
miRNA:   3'- cCGCCGua--CGa--GCACCAGUGua--GgCG- -5'
6730 5' -56.1 NC_001875.2 + 29340 0.68 0.796892
Target:  5'- uGCGGCGcccaccGCUUGUGGUC-CGuuUCCGg -3'
miRNA:   3'- cCGCCGUa-----CGAGCACCAGuGU--AGGCg -5'
6730 5' -56.1 NC_001875.2 + 42360 0.68 0.787788
Target:  5'- aGCGGCAUGCUCGcGuccaugcacacGUCGacaGUCuCGCu -3'
miRNA:   3'- cCGCCGUACGAGCaC-----------CAGUg--UAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.