miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 128785 0.7 0.680374
Target:  5'- cGGCGGCGguugGauggCGUGGgCGCGUUgGCg -3'
miRNA:   3'- -CCGCCGUa---Cga--GCACCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 128330 0.67 0.855964
Target:  5'- aGGcCGGCcUuaUCG-GGUCGCGUCCu- -3'
miRNA:   3'- -CC-GCCGuAcgAGCaCCAGUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 124573 0.7 0.699612
Target:  5'- uGGCGGCAcaccguuugcuccUGCUCGUaGUUAaacCCGCu -3'
miRNA:   3'- -CCGCCGU-------------ACGAGCAcCAGUguaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 120187 0.69 0.740341
Target:  5'- cGGCcGCgucgGUGUUUGUGGUCGCG-CCGg -3'
miRNA:   3'- -CCGcCG----UACGAGCACCAGUGUaGGCg -5'
6730 5' -56.1 NC_001875.2 + 118364 0.67 0.85362
Target:  5'- cGGCGGCccGCUguacgagugcgaccUGUgcaaGGagGCGUCCGCc -3'
miRNA:   3'- -CCGCCGuaCGA--------------GCA----CCagUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 118246 0.66 0.871117
Target:  5'- cGCGGCGUcGCgcacaaaGUGGUgGCAgcagucUCCGUu -3'
miRNA:   3'- cCGCCGUA-CGag-----CACCAgUGU------AGGCG- -5'
6730 5' -56.1 NC_001875.2 + 118186 0.66 0.871117
Target:  5'- cGCGGCGuUGCcgUCGcacUGGUCGCGguaCCGg -3'
miRNA:   3'- cCGCCGU-ACG--AGC---ACCAGUGUa--GGCg -5'
6730 5' -56.1 NC_001875.2 + 113903 0.69 0.740341
Target:  5'- cGGCGGC-UGCUCGUuucgcugguggGaGUCGCucAUCgGCu -3'
miRNA:   3'- -CCGCCGuACGAGCA-----------C-CAGUG--UAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 113364 0.72 0.577084
Target:  5'- cGGCGcucaaacGCAUGCUgGUGGgCACGUCgcagCGCg -3'
miRNA:   3'- -CCGC-------CGUACGAgCACCaGUGUAG----GCG- -5'
6730 5' -56.1 NC_001875.2 + 107995 0.66 0.88541
Target:  5'- gGGCGGCuuuuagcgcGUGCUUGgugggguaccUGGUCuACucgggCCGCu -3'
miRNA:   3'- -CCGCCG---------UACGAGC----------ACCAG-UGua---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 104971 0.66 0.878374
Target:  5'- cGGCGGCggGCUgGUGcacgGCAUCaGCa -3'
miRNA:   3'- -CCGCCGuaCGAgCACcag-UGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 104666 0.67 0.863646
Target:  5'- cGUGGCGUugaGCUCGcccuUGGcCAUGUCgGCa -3'
miRNA:   3'- cCGCCGUA---CGAGC----ACCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 98595 0.72 0.578099
Target:  5'- cGCGGUAgcGCUCGUGGcugagcuggCGCucGUCCGCu -3'
miRNA:   3'- cCGCCGUa-CGAGCACCa--------GUG--UAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 97831 0.67 0.848079
Target:  5'- uGGUGGCGcuuUGUUCGUugccGUCGgCGUCgCGCa -3'
miRNA:   3'- -CCGCCGU---ACGAGCAc---CAGU-GUAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 96955 0.66 0.878374
Target:  5'- cGGCgcugGGCAuugUGCgaaCGUGGUCcCAaaaCCGCg -3'
miRNA:   3'- -CCG----CCGU---ACGa--GCACCAGuGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 95921 0.67 0.82327
Target:  5'- cGCgGGCAUGCUCGaGGacaaggaccggCGCAUCCa- -3'
miRNA:   3'- cCG-CCGUACGAGCaCCa----------GUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 95352 0.66 0.892221
Target:  5'- cGGCGGC--GCaCGUGcaCGCGUCgGCg -3'
miRNA:   3'- -CCGCCGuaCGaGCACcaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 93191 0.71 0.608709
Target:  5'- cGGCGcuGCAauUGCUCGUGGUUguGCAguUgCGCg -3'
miRNA:   3'- -CCGC--CGU--ACGAGCACCAG--UGU--AgGCG- -5'
6730 5' -56.1 NC_001875.2 + 92015 0.67 0.855964
Target:  5'- uGGCGGCGuuUGCguacuuugCGaagGGcCACG-CCGCg -3'
miRNA:   3'- -CCGCCGU--ACGa-------GCa--CCaGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 91449 0.66 0.871117
Target:  5'- aGCGGCG-GCgCGUGGgcgcgCAUGUCCa- -3'
miRNA:   3'- cCGCCGUaCGaGCACCa----GUGUAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.