Results 1 - 20 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 100886 | 0.66 | 0.980705 |
Target: 5'- aCGCGUAAGCCgguccGGGC----GCCGCa -3' miRNA: 3'- cGCGCAUUUGGa----CCUGcaacUGGCGg -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 70450 | 0.66 | 0.978454 |
Target: 5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3' miRNA: 3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 128962 | 0.66 | 0.976014 |
Target: 5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3' miRNA: 3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 61612 | 0.66 | 0.973378 |
Target: 5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3' miRNA: 3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 44890 | 0.66 | 0.973378 |
Target: 5'- uGCGCc---GCUUGGACGcUGGCgcuCGCCc -3' miRNA: 3'- -CGCGcauuUGGACCUGCaACUG---GCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 107771 | 0.66 | 0.969645 |
Target: 5'- uGCGCcauucaagAAGCCUGaacgaggcaauaguGACGUUgaacagccacgcGACCGCCg -3' miRNA: 3'- -CGCGca------UUUGGAC--------------CUGCAA------------CUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 54358 | 0.66 | 0.973378 |
Target: 5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3' miRNA: 3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 7715 | 0.66 | 0.973378 |
Target: 5'- uGCuGCGUGAACgCgucGGACaUUGAC-GCCg -3' miRNA: 3'- -CG-CGCAUUUG-Ga--CCUGcAACUGgCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 119069 | 0.66 | 0.970538 |
Target: 5'- uGCGCGgcGccccGgCUGGACaacaACCGCCa -3' miRNA: 3'- -CGCGCauU----UgGACCUGcaacUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 29701 | 0.66 | 0.979376 |
Target: 5'- uGCGCGagaaccgGAACUgcagauacuaaucauUGGcAUGUUGGCCaGCCu -3' miRNA: 3'- -CGCGCa------UUUGG---------------ACC-UGCAACUGG-CGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 79782 | 0.66 | 0.980705 |
Target: 5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3' miRNA: 3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 39334 | 0.66 | 0.980488 |
Target: 5'- cGCGCGcUGcaggcgcAGCCU-GACGcUGAcgcCCGCCg -3' miRNA: 3'- -CGCGC-AU-------UUGGAcCUGCaACU---GGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 81478 | 0.66 | 0.970538 |
Target: 5'- cGCGCGgcacgauGACgaGGAgGagGcGCCGCCg -3' miRNA: 3'- -CGCGCau-----UUGgaCCUgCaaC-UGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 109040 | 0.66 | 0.970243 |
Target: 5'- gGCGCGUcaAGAUugcgucuUUGGugGUUuccagcGCCGCCa -3' miRNA: 3'- -CGCGCA--UUUG-------GACCugCAAc-----UGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 68287 | 0.66 | 0.970538 |
Target: 5'- uGCGCGUGAuuGCCUcgccGGAacugGACgCGCUg -3' miRNA: 3'- -CGCGCAUU--UGGA----CCUgcaaCUG-GCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 58954 | 0.66 | 0.980705 |
Target: 5'- aGCuuGUucGACUgaGGcCGUUGGCCGCCc -3' miRNA: 3'- -CGcgCAu-UUGGa-CCuGCAACUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 102520 | 0.66 | 0.970538 |
Target: 5'- uGCGCGccAugCUGGACGa--ACUGCa -3' miRNA: 3'- -CGCGCauUugGACCUGCaacUGGCGg -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 118923 | 0.66 | 0.970538 |
Target: 5'- --uUGUAAACgUcGGGCGUgagcaGGCCGCCc -3' miRNA: 3'- cgcGCAUUUGgA-CCUGCAa----CUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 74050 | 0.66 | 0.973378 |
Target: 5'- uCGCG-AAACgC-GGuCGUgcggGACCGCCg -3' miRNA: 3'- cGCGCaUUUG-GaCCuGCAa---CUGGCGG- -5' |
|||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 29990 | 0.66 | 0.973378 |
Target: 5'- uGCGCGgcGGCggUGGAcugcagcgugcCGUUGACCcaugcGCCg -3' miRNA: 3'- -CGCGCauUUGg-ACCU-----------GCAACUGG-----CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home