miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 110124 0.69 0.906515
Target:  5'- cGCGCuGUgGAACCUGcuGCGgcugGACCGCa -3'
miRNA:   3'- -CGCG-CA-UUUGGACc-UGCaa--CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 110072 0.76 0.595007
Target:  5'- cGCGCGcagAGACgCUGcGCGUggaGGCCGCCa -3'
miRNA:   3'- -CGCGCa--UUUG-GACcUGCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109862 0.69 0.893469
Target:  5'- cGCGCGUuuGCCaagcUGG-CGcUGgcGCCGCCc -3'
miRNA:   3'- -CGCGCAuuUGG----ACCuGCaAC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109040 0.66 0.970243
Target:  5'- gGCGCGUcaAGAUugcgucuUUGGugGUUuccagcGCCGCCa -3'
miRNA:   3'- -CGCGCA--UUUG-------GACCugCAAc-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 108711 0.67 0.959637
Target:  5'- uGCGCGcAAACCcaaauccUGGACGcguuggaaaaacUGGCgCGCCa -3'
miRNA:   3'- -CGCGCaUUUGG-------ACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 108006 0.67 0.959637
Target:  5'- aGCGCGU--GCUUGGugGggUaccuggucuacucgGGCCGCUu -3'
miRNA:   3'- -CGCGCAuuUGGACCugCa-A--------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 107771 0.66 0.969645
Target:  5'- uGCGCcauucaagAAGCCUGaacgaggcaauaguGACGUUgaacagccacgcGACCGCCg -3'
miRNA:   3'- -CGCGca------UUUGGAC--------------CUGCAA------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 105579 0.71 0.840583
Target:  5'- gGCGCGUGuacauCUUGG-CGgugGACaCGCCg -3'
miRNA:   3'- -CGCGCAUuu---GGACCuGCaa-CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 104703 0.76 0.564032
Target:  5'- uCGC-UAAGgCUGGugGUgUGGCCGCCa -3'
miRNA:   3'- cGCGcAUUUgGACCugCA-ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 103065 0.67 0.95701
Target:  5'- cCGCGUAuuUCgagagugGGGCGUguacGGCCGCg -3'
miRNA:   3'- cGCGCAUuuGGa------CCUGCAa---CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 102520 0.66 0.970538
Target:  5'- uGCGCGccAugCUGGACGa--ACUGCa -3'
miRNA:   3'- -CGCGCauUugGACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 100886 0.66 0.980705
Target:  5'- aCGCGUAAGCCgguccGGGC----GCCGCa -3'
miRNA:   3'- cGCGCAUUUGGa----CCUGcaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 100591 0.71 0.840583
Target:  5'- aCGCGUAcgcgGGCC-GGGCGccGGCCGCg -3'
miRNA:   3'- cGCGCAU----UUGGaCCUGCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 99959 0.69 0.912674
Target:  5'- cGCGCugGUGAACCacGGACuGUUGGCCa-- -3'
miRNA:   3'- -CGCG--CAUUUGGa-CCUG-CAACUGGcgg -5'
6731 3' -52.6 NC_001875.2 + 99343 0.68 0.939279
Target:  5'- aGCGuCGUGuccgcgcAACUUGGGCGc-GcCCGCCa -3'
miRNA:   3'- -CGC-GCAU-------UUGGACCUGCaaCuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 98744 0.68 0.934838
Target:  5'- gGUGCGUGcucAGCC-GcGACGgc-GCCGCCa -3'
miRNA:   3'- -CGCGCAU---UUGGaC-CUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 96817 0.69 0.924253
Target:  5'- aGCGcCGUcAAgCUGGACGUUauGCgCGCCu -3'
miRNA:   3'- -CGC-GCAuUUgGACCUGCAAc-UG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 95606 0.66 0.978454
Target:  5'- aGCaCGUAcaggGACCUGGugGacGACacgggCGCCg -3'
miRNA:   3'- -CGcGCAU----UUGGACCugCaaCUG-----GCGG- -5'
6731 3' -52.6 NC_001875.2 + 94787 0.74 0.678257
Target:  5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3'
miRNA:   3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 88173 0.67 0.960729
Target:  5'- cGgGCGUuuGCgC-GGGCGUUGGCUGgCu -3'
miRNA:   3'- -CgCGCAuuUG-GaCCUGCAACUGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.