miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 9418 0.7 0.886587
Target:  5'- cGCGCGaGGACCUGGuauuGCGUU-ACUgGCCc -3'
miRNA:   3'- -CGCGCaUUUGGACC----UGCAAcUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 59563 0.7 0.877293
Target:  5'- gGCGC----GCCUGGcuucguucaauugcAUGUUGACCGCg -3'
miRNA:   3'- -CGCGcauuUGGACC--------------UGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5'
6731 3' -52.6 NC_001875.2 + 48197 0.75 0.61581
Target:  5'- cGCGCGcccucguGCCugUGGGCGgcggccacgUGGCCGCCa -3'
miRNA:   3'- -CGCGCauu----UGG--ACCUGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 75183 0.67 0.958525
Target:  5'- aGCGCGUAcucguucacGGCCgacGGcuGCGUgccgcauuaccaaucUGACUGCCc -3'
miRNA:   3'- -CGCGCAU---------UUGGa--CC--UGCA---------------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 78479 0.68 0.93976
Target:  5'- uGCGCGUGuuUUUGGcgcACGUcGugCGCUa -3'
miRNA:   3'- -CGCGCAUuuGGACC---UGCAaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 131652 0.7 0.856778
Target:  5'- cGCGCGccgcagacUGucGAUCUGcACGUUGGCCGCg -3'
miRNA:   3'- -CGCGC--------AU--UUGGACcUGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 128878 0.76 0.574316
Target:  5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3'
miRNA:   3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 59044 0.68 0.929669
Target:  5'- cGCGCGUucgcGGCCUGcaaACGcUGcuCCGCCg -3'
miRNA:   3'- -CGCGCAu---UUGGACc--UGCaACu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66010 0.77 0.500623
Target:  5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3'
miRNA:   3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 26088 0.7 0.859917
Target:  5'- gGCGCGgcGGCCaccacgaaaaacucGGGCaUUGGCCGCUu -3'
miRNA:   3'- -CGCGCauUUGGa-------------CCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 19157 0.69 0.918587
Target:  5'- aGCGCGUugcGGCCUGcGCGc--ACUGCCg -3'
miRNA:   3'- -CGCGCAu--UUGGACcUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 38109 0.71 0.840583
Target:  5'- cCGCGUGAACacccguCUGGugGUUuuuaauaacGugCGCCu -3'
miRNA:   3'- cGCGCAUUUG------GACCugCAA---------CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 27261 0.72 0.768602
Target:  5'- uGUGCGUGAACg-GGACGggcgUGGgCGUCg -3'
miRNA:   3'- -CGCGCAUUUGgaCCUGCa---ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 41028 0.73 0.739272
Target:  5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3'
miRNA:   3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 94787 0.74 0.678257
Target:  5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3'
miRNA:   3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 49830 0.67 0.963881
Target:  5'- aGCGCGUuucgugcAACCaggucgugcucgaUGGGCGccGGCgGCCg -3'
miRNA:   3'- -CGCGCAu------UUGG-------------ACCUGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 36850 0.67 0.960004
Target:  5'- gGC-CGgcGAUCUGGACGauuacguggaggUGACgCGCCc -3'
miRNA:   3'- -CGcGCauUUGGACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 52485 0.67 0.956625
Target:  5'- gGCGCGccgaAAACUU-GACGUUGGCguguaugCGCCa -3'
miRNA:   3'- -CGCGCa---UUUGGAcCUGCAACUG-------GCGG- -5'
6731 3' -52.6 NC_001875.2 + 42036 0.68 0.948867
Target:  5'- gGCGCGgcGACagguguUGGACGagcagUUGuugcagcucGCCGCCg -3'
miRNA:   3'- -CGCGCauUUGg-----ACCUGC-----AAC---------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.