miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 36880 0.66 0.734477
Target:  5'- cGUcgUGcGCGCGGCACaCCGcCGgcaggaacUGGGUu -3'
miRNA:   3'- aCA--AC-CGCGCCGUGaGGC-GCa-------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 61966 0.66 0.744123
Target:  5'- gUGUUGGCauugauuguGCGGuCGCUgCGaCGgacGGGCc -3'
miRNA:   3'- -ACAACCG---------CGCC-GUGAgGC-GCaa-CCCG- -5'
6732 3' -59.1 NC_001875.2 + 128136 0.66 0.753673
Target:  5'- gGUUcGUGUGGCACggcagcaCCGCGccgccaagcUGGGCa -3'
miRNA:   3'- aCAAcCGCGCCGUGa------GGCGCa--------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 36418 0.66 0.724744
Target:  5'- cGcUGGC-CGGCGCcgCgGUGUcGGGCu -3'
miRNA:   3'- aCaACCGcGCCGUGa-GgCGCAaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 10880 0.66 0.744123
Target:  5'- cGUcggUGGCGCugccGCGCaaCGUGUUGGcGCa -3'
miRNA:   3'- aCA---ACCGCGc---CGUGagGCGCAACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 4728 0.66 0.734477
Target:  5'- aUGUcgGGCauGCGGCuGCU-CGCGUUGcuGGCg -3'
miRNA:   3'- -ACAa-CCG--CGCCG-UGAgGCGCAAC--CCG- -5'
6732 3' -59.1 NC_001875.2 + 74149 0.66 0.763118
Target:  5'- cGagGGCGCGGCGCccgCCGCcgccagcUUGGacGCg -3'
miRNA:   3'- aCaaCCGCGCCGUGa--GGCGc------AACC--CG- -5'
6732 3' -59.1 NC_001875.2 + 42590 0.66 0.763118
Target:  5'- ----cGCGCGcGUcaGCUCgGCGcUGGGCa -3'
miRNA:   3'- acaacCGCGC-CG--UGAGgCGCaACCCG- -5'
6732 3' -59.1 NC_001875.2 + 41712 0.66 0.734477
Target:  5'- cGUauGCGCGGCGCUgCGCGgcGucGCa -3'
miRNA:   3'- aCAacCGCGCCGUGAgGCGCaaCc-CG- -5'
6732 3' -59.1 NC_001875.2 + 61511 0.67 0.705053
Target:  5'- ---cGGCGCcGCAgUCCGCGUgcucgcgcuuGGCg -3'
miRNA:   3'- acaaCCGCGcCGUgAGGCGCAac--------CCG- -5'
6732 3' -59.1 NC_001875.2 + 39638 0.67 0.694116
Target:  5'- --aUGGCGCGcaGCGaaCCGCGcgcgaguUUGGGCc -3'
miRNA:   3'- acaACCGCGC--CGUgaGGCGC-------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 54519 0.67 0.685121
Target:  5'- aGUUGGgGcCGGcCACcgCCGCGUacucGGCg -3'
miRNA:   3'- aCAACCgC-GCC-GUGa-GGCGCAac--CCG- -5'
6732 3' -59.1 NC_001875.2 + 62348 0.67 0.714934
Target:  5'- aGUgGGCGCGGCGCcaguuugggUCgCGCGccaGGGa -3'
miRNA:   3'- aCAaCCGCGCCGUG---------AG-GCGCaa-CCCg -5'
6732 3' -59.1 NC_001875.2 + 117338 0.67 0.705053
Target:  5'- ---cGGCGCGGCGCgggCGaacCGgcGGGCc -3'
miRNA:   3'- acaaCCGCGCCGUGag-GC---GCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 80645 0.67 0.675087
Target:  5'- ---cGG-GCGGCGCcagaaCCGCGccgucgUGGGCa -3'
miRNA:   3'- acaaCCgCGCCGUGa----GGCGCa-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 12969 0.67 0.675087
Target:  5'- cGgcgGGCGUGG-GCUCCGCGccgugGuGGCu -3'
miRNA:   3'- aCaa-CCGCGCCgUGAGGCGCaa---C-CCG- -5'
6732 3' -59.1 NC_001875.2 + 5923 0.67 0.665017
Target:  5'- --aUGGCGUugGGUAgcgCCGCGcaggUGGGCg -3'
miRNA:   3'- acaACCGCG--CCGUga-GGCGCa---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 20851 0.67 0.661991
Target:  5'- cGUUGGCGgcggcuuggugucaCGGCGCUgCUuaGCGauuuucUUGGGCg -3'
miRNA:   3'- aCAACCGC--------------GCCGUGA-GG--CGC------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 41966 0.67 0.665017
Target:  5'- --cUGGcCGCGGCGCcggCgCGCGUgccGGCg -3'
miRNA:   3'- acaACC-GCGCCGUGa--G-GCGCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 54606 0.67 0.674081
Target:  5'- ---cGGCGCGGUaucgguggaacACUUuuuuguaCGCGUUGcGGCa -3'
miRNA:   3'- acaaCCGCGCCG-----------UGAG-------GCGCAAC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.