miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 6646 1.12 0.000807
Target:  5'- gUGUUGGCGCGGCACUCCGCGUUGGGCg -3'
miRNA:   3'- -ACAACCGCGCCGUGAGGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 73863 0.78 0.189211
Target:  5'- cGUUGGUGCGGCGCgaaaaCCGCGaaacGGCg -3'
miRNA:   3'- aCAACCGCGCCGUGa----GGCGCaac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 71131 0.77 0.198778
Target:  5'- --gUGGCuggGCGGCcucaGCgcggCCGCGUUGGGCa -3'
miRNA:   3'- acaACCG---CGCCG----UGa---GGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 33245 0.74 0.326335
Target:  5'- cGUUucGGCGCGGCGCUCCGaGUUGcaaaaGCc -3'
miRNA:   3'- aCAA--CCGCGCCGUGAGGCgCAACc----CG- -5'
6732 3' -59.1 NC_001875.2 + 37900 0.73 0.341227
Target:  5'- uUGcUGGCGCGGCACUggcaCCGCGcgUGuuggacgaGGCg -3'
miRNA:   3'- -ACaACCGCGCCGUGA----GGCGCa-AC--------CCG- -5'
6732 3' -59.1 NC_001875.2 + 11962 0.73 0.363681
Target:  5'- cGgcGGCGCGuugcaaaGCACUggcgaCgGCGUUGGGCg -3'
miRNA:   3'- aCaaCCGCGC-------CGUGA-----GgCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 75686 0.73 0.372462
Target:  5'- cGUUGGCGuCGGCG-UCgGCGa-GGGCa -3'
miRNA:   3'- aCAACCGC-GCCGUgAGgCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 98807 0.72 0.388792
Target:  5'- ---cGGCGCGGCGCccgCCGCGcUGcGCu -3'
miRNA:   3'- acaaCCGCGCCGUGa--GGCGCaACcCG- -5'
6732 3' -59.1 NC_001875.2 + 72569 0.72 0.397132
Target:  5'- cGcgGGCGCgGGCGCUgCGgGUgcGGGCg -3'
miRNA:   3'- aCaaCCGCG-CCGUGAgGCgCAa-CCCG- -5'
6732 3' -59.1 NC_001875.2 + 111814 0.72 0.397132
Target:  5'- ---cGGCGCcuGGCuGCUCCGCGUgacGGCu -3'
miRNA:   3'- acaaCCGCG--CCG-UGAGGCGCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 75614 0.72 0.414152
Target:  5'- cGUUGGCGuCGGCguugGCgUCgGCGUUGGcGUc -3'
miRNA:   3'- aCAACCGC-GCCG----UG-AGgCGCAACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 50235 0.72 0.417609
Target:  5'- -uUUGGCGCGGCgcggcaucuucuccuGCUCauacaGCGUaucGGGCa -3'
miRNA:   3'- acAACCGCGCCG---------------UGAGg----CGCAa--CCCG- -5'
6732 3' -59.1 NC_001875.2 + 120923 0.72 0.419345
Target:  5'- -uUUGGCGaCGaGCACUUCGCGguuggacguuugGGGCu -3'
miRNA:   3'- acAACCGC-GC-CGUGAGGCGCaa----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 77645 0.72 0.422828
Target:  5'- cGUUGGaCGC-GCcCggCGCGUUGGGCg -3'
miRNA:   3'- aCAACC-GCGcCGuGagGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 53879 0.71 0.428086
Target:  5'- cUGUUGGUcguGCGGC-CgCCGCGgcgcaaauaauugUGGGCg -3'
miRNA:   3'- -ACAACCG---CGCCGuGaGGCGCa------------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 85495 0.71 0.449497
Target:  5'- ---cGGCGuCGGCG-UUCGCGgcGGGCg -3'
miRNA:   3'- acaaCCGC-GCCGUgAGGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 49987 0.71 0.467783
Target:  5'- cUGUagcUGaCGCGGCGCUugUCGCGguugGGGCg -3'
miRNA:   3'- -ACA---ACcGCGCCGUGA--GGCGCaa--CCCG- -5'
6732 3' -59.1 NC_001875.2 + 10408 0.7 0.485502
Target:  5'- --gUGGCGCGGCAC-CCGCuGcacuacccaacauUUGGcGCa -3'
miRNA:   3'- acaACCGCGCCGUGaGGCG-C-------------AACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 37109 0.7 0.486443
Target:  5'- gUGUgcgGGCGCGGCg--CCGCGcc-GGCg -3'
miRNA:   3'- -ACAa--CCGCGCCGugaGGCGCaacCCG- -5'
6732 3' -59.1 NC_001875.2 + 113562 0.7 0.495905
Target:  5'- ---cGGCGCgaGGCGCggUCCGCG-UGGcGCg -3'
miRNA:   3'- acaaCCGCG--CCGUG--AGGCGCaACC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.