miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 31117 0.7 0.505449
Target:  5'- ---aGGCGCaGCGCg-CGCG-UGGGCg -3'
miRNA:   3'- acaaCCGCGcCGUGagGCGCaACCCG- -5'
6732 3' -59.1 NC_001875.2 + 18646 0.7 0.505449
Target:  5'- gGUcgGGCGCGGCuGCgucgCUGCGgcGcGGCg -3'
miRNA:   3'- aCAa-CCGCGCCG-UGa---GGCGCaaC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 1032 0.7 0.505449
Target:  5'- --gUGGCGgGGCcCgaggcgCacaGCGUUGGGCg -3'
miRNA:   3'- acaACCGCgCCGuGa-----Gg--CGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 47677 0.7 0.516038
Target:  5'- ---cGGcCGCGGCGCgCCGCGcguuucucaacgcgGGGCa -3'
miRNA:   3'- acaaCC-GCGCCGUGaGGCGCaa------------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 85805 0.7 0.534532
Target:  5'- aUGUUGuGaagcauuucCGCGGCGCcagCUGCG-UGGGCg -3'
miRNA:   3'- -ACAAC-C---------GCGCCGUGa--GGCGCaACCCG- -5'
6732 3' -59.1 NC_001875.2 + 111902 0.7 0.534532
Target:  5'- --gUGcGCGcCGGcCGCUCCGUGUacGGGCc -3'
miRNA:   3'- acaAC-CGC-GCC-GUGAGGCGCAa-CCCG- -5'
6732 3' -59.1 NC_001875.2 + 91680 0.69 0.544359
Target:  5'- --aUGGUgGCGGCGC-CCGUuuuuUUGGGCg -3'
miRNA:   3'- acaACCG-CGCCGUGaGGCGc---AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 36434 0.69 0.564183
Target:  5'- ---cGGCGCauuGGCGCUCCGuUGUgcaGGCg -3'
miRNA:   3'- acaaCCGCG---CCGUGAGGC-GCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 101080 0.69 0.564183
Target:  5'- cGUUGugggagcgaGCGCGGCGagcguCUCCGCGcgcUGcGGCg -3'
miRNA:   3'- aCAAC---------CGCGCCGU-----GAGGCGCa--AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 67144 0.69 0.564183
Target:  5'- gUGUUGcUGCGGCugUCUGCGc-GGGa -3'
miRNA:   3'- -ACAACcGCGCCGugAGGCGCaaCCCg -5'
6732 3' -59.1 NC_001875.2 + 79124 0.69 0.564183
Target:  5'- uUGUcGGCgGCGG-GCgCCGCGgcGGGCu -3'
miRNA:   3'- -ACAaCCG-CGCCgUGaGGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 68547 0.69 0.574168
Target:  5'- ---cGGCGuCGGuUugUCgGCGUUGGuGCg -3'
miRNA:   3'- acaaCCGC-GCC-GugAGgCGCAACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 84043 0.69 0.584193
Target:  5'- aGUaGGCaGgGGCACUCCGCGcccccgUGcGCg -3'
miRNA:   3'- aCAaCCG-CgCCGUGAGGCGCa-----ACcCG- -5'
6732 3' -59.1 NC_001875.2 + 26838 0.69 0.584193
Target:  5'- ----cGCGCGGCGC---GUGUUGGGCg -3'
miRNA:   3'- acaacCGCGCCGUGaggCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 123212 0.69 0.594251
Target:  5'- gGUUGGCGCucauuuGGCACUCgcuuuucaccuCGUuuaggUGGGCg -3'
miRNA:   3'- aCAACCGCG------CCGUGAG-----------GCGca---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 98341 0.69 0.594251
Target:  5'- aUGUUGGCgcuGCGGCACgUCGacuacaaGUuuuucUGGGCg -3'
miRNA:   3'- -ACAACCG---CGCCGUGaGGCg------CA-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 99529 0.68 0.604337
Target:  5'- ---cGGUGCGGCGCUuuGgccacuUGgcGGGCg -3'
miRNA:   3'- acaaCCGCGCCGUGAggC------GCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 52136 0.68 0.604337
Target:  5'- aUGUUGGgGUGGCGCgugguccacgCgCGCGcgUGcGGCa -3'
miRNA:   3'- -ACAACCgCGCCGUGa---------G-GCGCa-AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 117941 0.68 0.614443
Target:  5'- ---cGGCGUGcGCGCcgCCGCGUUuGGUu -3'
miRNA:   3'- acaaCCGCGC-CGUGa-GGCGCAAcCCG- -5'
6732 3' -59.1 NC_001875.2 + 18152 0.68 0.614443
Target:  5'- aGUuacUGGUGCGGCGCgcgcgacgCCGCcacUGuGGCg -3'
miRNA:   3'- aCA---ACCGCGCCGUGa-------GGCGca-AC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.