Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 3' | -59.1 | NC_001875.2 | + | 35384 | 0.67 | 0.714934 |
Target: 5'- cUGgaGGCGCuGCugUCCGUGgcGcGCg -3' miRNA: 3'- -ACaaCCGCGcCGugAGGCGCaaCcCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 37738 | 0.67 | 0.714934 |
Target: 5'- ---cGGcCGCGGCGCUC-GCGccGGcGCa -3' miRNA: 3'- acaaCC-GCGCCGUGAGgCGCaaCC-CG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 74955 | 0.67 | 0.714934 |
Target: 5'- ---gGGCGCGucGUACUCCaGCucgacggUGGGCa -3' miRNA: 3'- acaaCCGCGC--CGUGAGG-CGca-----ACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 83493 | 0.67 | 0.718867 |
Target: 5'- gUGUaGcGUGCGGCACcacgucaagaCCGCGUuuaagacgccggugcUGGGCc -3' miRNA: 3'- -ACAaC-CGCGCCGUGa---------GGCGCA---------------ACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 58985 | 0.67 | 0.685121 |
Target: 5'- aGUgacGGUGCGcaacGCGCgcauuUCCGCGUgcagcUGGGCc -3' miRNA: 3'- aCAa--CCGCGC----CGUG-----AGGCGCA-----ACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 20851 | 0.67 | 0.661991 |
Target: 5'- cGUUGGCGgcggcuuggugucaCGGCGCUgCUuaGCGauuuucUUGGGCg -3' miRNA: 3'- aCAACCGC--------------GCCGUGA-GG--CGC------AACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 98445 | 0.67 | 0.695113 |
Target: 5'- cGUUGGCcacaguGCGGUcg-CCGCG--GGGCa -3' miRNA: 3'- aCAACCG------CGCCGugaGGCGCaaCCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 128888 | 0.67 | 0.675087 |
Target: 5'- ---gGGCGCGGCucgCgGCGcagaccUGGGCg -3' miRNA: 3'- acaaCCGCGCCGugaGgCGCa-----ACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 41966 | 0.67 | 0.665017 |
Target: 5'- --cUGGcCGCGGCGCcggCgCGCGUgccGGCg -3' miRNA: 3'- acaACC-GCGCCGUGa--G-GCGCAac-CCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 81499 | 0.67 | 0.695113 |
Target: 5'- --gUGcGCGCGGCACcagcgcgCCGCGc--GGCa -3' miRNA: 3'- acaAC-CGCGCCGUGa------GGCGCaacCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 47837 | 0.67 | 0.695113 |
Target: 5'- cGUUGagaaacGCGCGGCGCgCCGCGgcc-GCg -3' miRNA: 3'- aCAAC------CGCGCCGUGaGGCGCaaccCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 18152 | 0.68 | 0.614443 |
Target: 5'- aGUuacUGGUGCGGCGCgcgcgacgCCGCcacUGuGGCg -3' miRNA: 3'- aCA---ACCGCGCCGUGa-------GGCGca-AC-CCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 41444 | 0.68 | 0.644809 |
Target: 5'- aUGUUGaUGCGGUACg-CGCGaaGGGCg -3' miRNA: 3'- -ACAACcGCGCCGUGagGCGCaaCCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 109403 | 0.68 | 0.654922 |
Target: 5'- cGUUGGC-CGGCcgGCUguacgguuUCGUGUcucUGGGCa -3' miRNA: 3'- aCAACCGcGCCG--UGA--------GGCGCA---ACCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 117941 | 0.68 | 0.614443 |
Target: 5'- ---cGGCGUGcGCGCcgCCGCGUUuGGUu -3' miRNA: 3'- acaaCCGCGC-CGUGa-GGCGCAAcCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 42072 | 0.68 | 0.658963 |
Target: 5'- ---aGG-GCGGCGCgUCCGCGggccacuauucgcGGGCa -3' miRNA: 3'- acaaCCgCGCCGUG-AGGCGCaa-----------CCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 10677 | 0.68 | 0.624562 |
Target: 5'- -cUUGGCGCaGGCGCUgCCGCaac-GGCu -3' miRNA: 3'- acAACCGCG-CCGUGA-GGCGcaacCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 79491 | 0.68 | 0.634687 |
Target: 5'- cGcUGGCGCGGCACgcgCCGCacuugaaaUUGuGCa -3' miRNA: 3'- aCaACCGCGCCGUGa--GGCGc-------AACcCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 128757 | 0.68 | 0.634687 |
Target: 5'- ---cGGCGCGuGCACgCCGU---GGGCg -3' miRNA: 3'- acaaCCGCGC-CGUGaGGCGcaaCCCG- -5' |
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6732 | 3' | -59.1 | NC_001875.2 | + | 85306 | 0.68 | 0.654922 |
Target: 5'- cGcgGGCGCgGGCAUUgCCGC---GGGCg -3' miRNA: 3'- aCaaCCGCG-CCGUGA-GGCGcaaCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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