miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 37738 0.67 0.714934
Target:  5'- ---cGGcCGCGGCGCUC-GCGccGGcGCa -3'
miRNA:   3'- acaaCC-GCGCCGUGAGgCGCaaCC-CG- -5'
6732 3' -59.1 NC_001875.2 + 37900 0.73 0.341227
Target:  5'- uUGcUGGCGCGGCACUggcaCCGCGcgUGuuggacgaGGCg -3'
miRNA:   3'- -ACaACCGCGCCGUGA----GGCGCa-AC--------CCG- -5'
6732 3' -59.1 NC_001875.2 + 39638 0.67 0.694116
Target:  5'- --aUGGCGCGcaGCGaaCCGCGcgcgaguUUGGGCc -3'
miRNA:   3'- acaACCGCGC--CGUgaGGCGC-------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 41444 0.68 0.644809
Target:  5'- aUGUUGaUGCGGUACg-CGCGaaGGGCg -3'
miRNA:   3'- -ACAACcGCGCCGUGagGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 41712 0.66 0.734477
Target:  5'- cGUauGCGCGGCGCUgCGCGgcGucGCa -3'
miRNA:   3'- aCAacCGCGCCGUGAgGCGCaaCc-CG- -5'
6732 3' -59.1 NC_001875.2 + 41966 0.67 0.665017
Target:  5'- --cUGGcCGCGGCGCcggCgCGCGUgccGGCg -3'
miRNA:   3'- acaACC-GCGCCGUGa--G-GCGCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 42072 0.68 0.658963
Target:  5'- ---aGG-GCGGCGCgUCCGCGggccacuauucgcGGGCa -3'
miRNA:   3'- acaaCCgCGCCGUG-AGGCGCaa-----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 42590 0.66 0.763118
Target:  5'- ----cGCGCGcGUcaGCUCgGCGcUGGGCa -3'
miRNA:   3'- acaacCGCGC-CG--UGAGgCGCaACCCG- -5'
6732 3' -59.1 NC_001875.2 + 47677 0.7 0.516038
Target:  5'- ---cGGcCGCGGCGCgCCGCGcguuucucaacgcgGGGCa -3'
miRNA:   3'- acaaCC-GCGCCGUGaGGCGCaa------------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 47837 0.67 0.695113
Target:  5'- cGUUGagaaacGCGCGGCGCgCCGCGgcc-GCg -3'
miRNA:   3'- aCAAC------CGCGCCGUGaGGCGCaaccCG- -5'
6732 3' -59.1 NC_001875.2 + 49987 0.71 0.467783
Target:  5'- cUGUagcUGaCGCGGCGCUugUCGCGguugGGGCg -3'
miRNA:   3'- -ACA---ACcGCGCCGUGA--GGCGCaa--CCCG- -5'
6732 3' -59.1 NC_001875.2 + 50235 0.72 0.417609
Target:  5'- -uUUGGCGCGGCgcggcaucuucuccuGCUCauacaGCGUaucGGGCa -3'
miRNA:   3'- acAACCGCGCCG---------------UGAGg----CGCAa--CCCG- -5'
6732 3' -59.1 NC_001875.2 + 52136 0.68 0.604337
Target:  5'- aUGUUGGgGUGGCGCgugguccacgCgCGCGcgUGcGGCa -3'
miRNA:   3'- -ACAACCgCGCCGUGa---------G-GCGCa-AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 53879 0.71 0.428086
Target:  5'- cUGUUGGUcguGCGGC-CgCCGCGgcgcaaauaauugUGGGCg -3'
miRNA:   3'- -ACAACCG---CGCCGuGaGGCGCa------------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 54519 0.67 0.685121
Target:  5'- aGUUGGgGcCGGcCACcgCCGCGUacucGGCg -3'
miRNA:   3'- aCAACCgC-GCC-GUGa-GGCGCAac--CCG- -5'
6732 3' -59.1 NC_001875.2 + 54606 0.67 0.674081
Target:  5'- ---cGGCGCGGUaucgguggaacACUUuuuuguaCGCGUUGcGGCa -3'
miRNA:   3'- acaaCCGCGCCG-----------UGAG-------GCGCAAC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 58985 0.67 0.685121
Target:  5'- aGUgacGGUGCGcaacGCGCgcauuUCCGCGUgcagcUGGGCc -3'
miRNA:   3'- aCAa--CCGCGC----CGUG-----AGGCGCA-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 61511 0.67 0.705053
Target:  5'- ---cGGCGCcGCAgUCCGCGUgcucgcgcuuGGCg -3'
miRNA:   3'- acaaCCGCGcCGUgAGGCGCAac--------CCG- -5'
6732 3' -59.1 NC_001875.2 + 61966 0.66 0.744123
Target:  5'- gUGUUGGCauugauuguGCGGuCGCUgCGaCGgacGGGCc -3'
miRNA:   3'- -ACAACCG---------CGCC-GUGAgGC-GCaa-CCCG- -5'
6732 3' -59.1 NC_001875.2 + 62348 0.67 0.714934
Target:  5'- aGUgGGCGCGGCGCcaguuugggUCgCGCGccaGGGa -3'
miRNA:   3'- aCAaCCGCGCCGUG---------AG-GCGCaa-CCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.