miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 1032 0.7 0.505449
Target:  5'- --gUGGCGgGGCcCgaggcgCacaGCGUUGGGCg -3'
miRNA:   3'- acaACCGCgCCGuGa-----Gg--CGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 4728 0.66 0.734477
Target:  5'- aUGUcgGGCauGCGGCuGCU-CGCGUUGcuGGCg -3'
miRNA:   3'- -ACAa-CCG--CGCCG-UGAgGCGCAAC--CCG- -5'
6732 3' -59.1 NC_001875.2 + 5923 0.67 0.665017
Target:  5'- --aUGGCGUugGGUAgcgCCGCGcaggUGGGCg -3'
miRNA:   3'- acaACCGCG--CCGUga-GGCGCa---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 6646 1.12 0.000807
Target:  5'- gUGUUGGCGCGGCACUCCGCGUUGGGCg -3'
miRNA:   3'- -ACAACCGCGCCGUGAGGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 10408 0.7 0.485502
Target:  5'- --gUGGCGCGGCAC-CCGCuGcacuacccaacauUUGGcGCa -3'
miRNA:   3'- acaACCGCGCCGUGaGGCG-C-------------AACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 10677 0.68 0.624562
Target:  5'- -cUUGGCGCaGGCGCUgCCGCaac-GGCu -3'
miRNA:   3'- acAACCGCG-CCGUGA-GGCGcaacCCG- -5'
6732 3' -59.1 NC_001875.2 + 10880 0.66 0.744123
Target:  5'- cGUcggUGGCGCugccGCGCaaCGUGUUGGcGCa -3'
miRNA:   3'- aCA---ACCGCGc---CGUGagGCGCAACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 11962 0.73 0.363681
Target:  5'- cGgcGGCGCGuugcaaaGCACUggcgaCgGCGUUGGGCg -3'
miRNA:   3'- aCaaCCGCGC-------CGUGA-----GgCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 12969 0.67 0.675087
Target:  5'- cGgcgGGCGUGG-GCUCCGCGccgugGuGGCu -3'
miRNA:   3'- aCaa-CCGCGCCgUGAGGCGCaa---C-CCG- -5'
6732 3' -59.1 NC_001875.2 + 18152 0.68 0.614443
Target:  5'- aGUuacUGGUGCGGCGCgcgcgacgCCGCcacUGuGGCg -3'
miRNA:   3'- aCA---ACCGCGCCGUGa-------GGCGca-AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 18646 0.7 0.505449
Target:  5'- gGUcgGGCGCGGCuGCgucgCUGCGgcGcGGCg -3'
miRNA:   3'- aCAa-CCGCGCCG-UGa---GGCGCaaC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 20851 0.67 0.661991
Target:  5'- cGUUGGCGgcggcuuggugucaCGGCGCUgCUuaGCGauuuucUUGGGCg -3'
miRNA:   3'- aCAACCGC--------------GCCGUGA-GG--CGC------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 26838 0.69 0.584193
Target:  5'- ----cGCGCGGCGC---GUGUUGGGCg -3'
miRNA:   3'- acaacCGCGCCGUGaggCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 31117 0.7 0.505449
Target:  5'- ---aGGCGCaGCGCg-CGCG-UGGGCg -3'
miRNA:   3'- acaaCCGCGcCGUGagGCGCaACCCG- -5'
6732 3' -59.1 NC_001875.2 + 33245 0.74 0.326335
Target:  5'- cGUUucGGCGCGGCGCUCCGaGUUGcaaaaGCc -3'
miRNA:   3'- aCAA--CCGCGCCGUGAGGCgCAACc----CG- -5'
6732 3' -59.1 NC_001875.2 + 35384 0.67 0.714934
Target:  5'- cUGgaGGCGCuGCugUCCGUGgcGcGCg -3'
miRNA:   3'- -ACaaCCGCGcCGugAGGCGCaaCcCG- -5'
6732 3' -59.1 NC_001875.2 + 36418 0.66 0.724744
Target:  5'- cGcUGGC-CGGCGCcgCgGUGUcGGGCu -3'
miRNA:   3'- aCaACCGcGCCGUGa-GgCGCAaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 36434 0.69 0.564183
Target:  5'- ---cGGCGCauuGGCGCUCCGuUGUgcaGGCg -3'
miRNA:   3'- acaaCCGCG---CCGUGAGGC-GCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 36880 0.66 0.734477
Target:  5'- cGUcgUGcGCGCGGCACaCCGcCGgcaggaacUGGGUu -3'
miRNA:   3'- aCA--AC-CGCGCCGUGaGGC-GCa-------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 37109 0.7 0.486443
Target:  5'- gUGUgcgGGCGCGGCg--CCGCGcc-GGCg -3'
miRNA:   3'- -ACAa--CCGCGCCGugaGGCGCaacCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.