miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 128888 0.67 0.675087
Target:  5'- ---gGGCGCGGCucgCgGCGcagaccUGGGCg -3'
miRNA:   3'- acaaCCGCGCCGugaGgCGCa-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 128757 0.68 0.634687
Target:  5'- ---cGGCGCGuGCACgCCGU---GGGCg -3'
miRNA:   3'- acaaCCGCGC-CGUGaGGCGcaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 128136 0.66 0.753673
Target:  5'- gGUUcGUGUGGCACggcagcaCCGCGccgccaagcUGGGCa -3'
miRNA:   3'- aCAAcCGCGCCGUGa------GGCGCa--------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 123212 0.69 0.594251
Target:  5'- gGUUGGCGCucauuuGGCACUCgcuuuucaccuCGUuuaggUGGGCg -3'
miRNA:   3'- aCAACCGCG------CCGUGAG-----------GCGca---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 120923 0.72 0.419345
Target:  5'- -uUUGGCGaCGaGCACUUCGCGguuggacguuugGGGCu -3'
miRNA:   3'- acAACCGC-GC-CGUGAGGCGCaa----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 117941 0.68 0.614443
Target:  5'- ---cGGCGUGcGCGCcgCCGCGUUuGGUu -3'
miRNA:   3'- acaaCCGCGC-CGUGa-GGCGCAAcCCG- -5'
6732 3' -59.1 NC_001875.2 + 117338 0.67 0.705053
Target:  5'- ---cGGCGCGGCGCgggCGaacCGgcGGGCc -3'
miRNA:   3'- acaaCCGCGCCGUGag-GC---GCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 113564 0.67 0.665017
Target:  5'- ---cGGCGCGGuCGCgcacggCGCGccaUUGGGCc -3'
miRNA:   3'- acaaCCGCGCC-GUGag----GCGC---AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 113562 0.7 0.495905
Target:  5'- ---cGGCGCgaGGCGCggUCCGCG-UGGcGCg -3'
miRNA:   3'- acaaCCGCG--CCGUG--AGGCGCaACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 111902 0.7 0.534532
Target:  5'- --gUGcGCGcCGGcCGCUCCGUGUacGGGCc -3'
miRNA:   3'- acaAC-CGC-GCC-GUGAGGCGCAa-CCCG- -5'
6732 3' -59.1 NC_001875.2 + 111814 0.72 0.397132
Target:  5'- ---cGGCGCcuGGCuGCUCCGCGUgacGGCu -3'
miRNA:   3'- acaaCCGCG--CCG-UGAGGCGCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 109403 0.68 0.654922
Target:  5'- cGUUGGC-CGGCcgGCUguacgguuUCGUGUcucUGGGCa -3'
miRNA:   3'- aCAACCGcGCCG--UGA--------GGCGCA---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 101080 0.69 0.564183
Target:  5'- cGUUGugggagcgaGCGCGGCGagcguCUCCGCGcgcUGcGGCg -3'
miRNA:   3'- aCAAC---------CGCGCCGU-----GAGGCGCa--AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 99529 0.68 0.604337
Target:  5'- ---cGGUGCGGCGCUuuGgccacuUGgcGGGCg -3'
miRNA:   3'- acaaCCGCGCCGUGAggC------GCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 98807 0.72 0.388792
Target:  5'- ---cGGCGCGGCGCccgCCGCGcUGcGCu -3'
miRNA:   3'- acaaCCGCGCCGUGa--GGCGCaACcCG- -5'
6732 3' -59.1 NC_001875.2 + 98445 0.67 0.695113
Target:  5'- cGUUGGCcacaguGCGGUcg-CCGCG--GGGCa -3'
miRNA:   3'- aCAACCG------CGCCGugaGGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 98341 0.69 0.594251
Target:  5'- aUGUUGGCgcuGCGGCACgUCGacuacaaGUuuuucUGGGCg -3'
miRNA:   3'- -ACAACCG---CGCCGUGaGGCg------CA-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 91680 0.69 0.544359
Target:  5'- --aUGGUgGCGGCGC-CCGUuuuuUUGGGCg -3'
miRNA:   3'- acaACCG-CGCCGUGaGGCGc---AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 87526 0.68 0.614443
Target:  5'- cGUUGGCGCGcuGCGggucuugaguUUCCGaCaUUGGGCu -3'
miRNA:   3'- aCAACCGCGC--CGU----------GAGGC-GcAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 85805 0.7 0.534532
Target:  5'- aUGUUGuGaagcauuucCGCGGCGCcagCUGCG-UGGGCg -3'
miRNA:   3'- -ACAAC-C---------GCGCCGUGa--GGCGCaACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.