miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 39638 0.67 0.694116
Target:  5'- --aUGGCGCGcaGCGaaCCGCGcgcgaguUUGGGCc -3'
miRNA:   3'- acaACCGCGC--CGUgaGGCGC-------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 58985 0.67 0.685121
Target:  5'- aGUgacGGUGCGcaacGCGCgcauuUCCGCGUgcagcUGGGCc -3'
miRNA:   3'- aCAa--CCGCGC----CGUG-----AGGCGCA-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 54519 0.67 0.685121
Target:  5'- aGUUGGgGcCGGcCACcgCCGCGUacucGGCg -3'
miRNA:   3'- aCAACCgC-GCC-GUGa-GGCGCAac--CCG- -5'
6732 3' -59.1 NC_001875.2 + 128888 0.67 0.675087
Target:  5'- ---gGGCGCGGCucgCgGCGcagaccUGGGCg -3'
miRNA:   3'- acaaCCGCGCCGugaGgCGCa-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 80645 0.67 0.675087
Target:  5'- ---cGG-GCGGCGCcagaaCCGCGccgucgUGGGCa -3'
miRNA:   3'- acaaCCgCGCCGUGa----GGCGCa-----ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 12969 0.67 0.675087
Target:  5'- cGgcgGGCGUGG-GCUCCGCGccgugGuGGCu -3'
miRNA:   3'- aCaa-CCGCGCCgUGAGGCGCaa---C-CCG- -5'
6732 3' -59.1 NC_001875.2 + 54606 0.67 0.674081
Target:  5'- ---cGGCGCGGUaucgguggaacACUUuuuuguaCGCGUUGcGGCa -3'
miRNA:   3'- acaaCCGCGCCG-----------UGAG-------GCGCAAC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 41966 0.67 0.665017
Target:  5'- --cUGGcCGCGGCGCcggCgCGCGUgccGGCg -3'
miRNA:   3'- acaACC-GCGCCGUGa--G-GCGCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 113564 0.67 0.665017
Target:  5'- ---cGGCGCGGuCGCgcacggCGCGccaUUGGGCc -3'
miRNA:   3'- acaaCCGCGCC-GUGag----GCGC---AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 5923 0.67 0.665017
Target:  5'- --aUGGCGUugGGUAgcgCCGCGcaggUGGGCg -3'
miRNA:   3'- acaACCGCG--CCGUga-GGCGCa---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 20851 0.67 0.661991
Target:  5'- cGUUGGCGgcggcuuggugucaCGGCGCUgCUuaGCGauuuucUUGGGCg -3'
miRNA:   3'- aCAACCGC--------------GCCGUGA-GG--CGC------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 42072 0.68 0.658963
Target:  5'- ---aGG-GCGGCGCgUCCGCGggccacuauucgcGGGCa -3'
miRNA:   3'- acaaCCgCGCCGUG-AGGCGCaa-----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 109403 0.68 0.654922
Target:  5'- cGUUGGC-CGGCcgGCUguacgguuUCGUGUcucUGGGCa -3'
miRNA:   3'- aCAACCGcGCCG--UGA--------GGCGCA---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 85306 0.68 0.654922
Target:  5'- cGcgGGCGCgGGCAUUgCCGC---GGGCg -3'
miRNA:   3'- aCaaCCGCG-CCGUGA-GGCGcaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 41444 0.68 0.644809
Target:  5'- aUGUUGaUGCGGUACg-CGCGaaGGGCg -3'
miRNA:   3'- -ACAACcGCGCCGUGagGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 79491 0.68 0.634687
Target:  5'- cGcUGGCGCGGCACgcgCCGCacuugaaaUUGuGCa -3'
miRNA:   3'- aCaACCGCGCCGUGa--GGCGc-------AACcCG- -5'
6732 3' -59.1 NC_001875.2 + 128757 0.68 0.634687
Target:  5'- ---cGGCGCGuGCACgCCGU---GGGCg -3'
miRNA:   3'- acaaCCGCGC-CGUGaGGCGcaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 10677 0.68 0.624562
Target:  5'- -cUUGGCGCaGGCGCUgCCGCaac-GGCu -3'
miRNA:   3'- acAACCGCG-CCGUGA-GGCGcaacCCG- -5'
6732 3' -59.1 NC_001875.2 + 117941 0.68 0.614443
Target:  5'- ---cGGCGUGcGCGCcgCCGCGUUuGGUu -3'
miRNA:   3'- acaaCCGCGC-CGUGa-GGCGCAAcCCG- -5'
6732 3' -59.1 NC_001875.2 + 87526 0.68 0.614443
Target:  5'- cGUUGGCGCGcuGCGggucuugaguUUCCGaCaUUGGGCu -3'
miRNA:   3'- aCAACCGCGC--CGU----------GAGGC-GcAACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.