miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 3' -59.1 NC_001875.2 + 6646 1.12 0.000807
Target:  5'- gUGUUGGCGCGGCACUCCGCGUUGGGCg -3'
miRNA:   3'- -ACAACCGCGCCGUGAGGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 109403 0.68 0.654922
Target:  5'- cGUUGGC-CGGCcgGCUguacgguuUCGUGUcucUGGGCa -3'
miRNA:   3'- aCAACCGcGCCG--UGA--------GGCGCA---ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 20851 0.67 0.661991
Target:  5'- cGUUGGCGgcggcuuggugucaCGGCGCUgCUuaGCGauuuucUUGGGCg -3'
miRNA:   3'- aCAACCGC--------------GCCGUGA-GG--CGC------AACCCG- -5'
6732 3' -59.1 NC_001875.2 + 128136 0.66 0.753673
Target:  5'- gGUUcGUGUGGCACggcagcaCCGCGccgccaagcUGGGCa -3'
miRNA:   3'- aCAAcCGCGCCGUGa------GGCGCa--------ACCCG- -5'
6732 3' -59.1 NC_001875.2 + 113562 0.7 0.495905
Target:  5'- ---cGGCGCgaGGCGCggUCCGCG-UGGcGCg -3'
miRNA:   3'- acaaCCGCG--CCGUG--AGGCGCaACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 18646 0.7 0.505449
Target:  5'- gGUcgGGCGCGGCuGCgucgCUGCGgcGcGGCg -3'
miRNA:   3'- aCAa-CCGCGCCG-UGa---GGCGCaaC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 101080 0.69 0.564183
Target:  5'- cGUUGugggagcgaGCGCGGCGagcguCUCCGCGcgcUGcGGCg -3'
miRNA:   3'- aCAAC---------CGCGCCGU-----GAGGCGCa--AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 36434 0.69 0.564183
Target:  5'- ---cGGCGCauuGGCGCUCCGuUGUgcaGGCg -3'
miRNA:   3'- acaaCCGCG---CCGUGAGGC-GCAac-CCG- -5'
6732 3' -59.1 NC_001875.2 + 26838 0.69 0.584193
Target:  5'- ----cGCGCGGCGC---GUGUUGGGCg -3'
miRNA:   3'- acaacCGCGCCGUGaggCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 41444 0.68 0.644809
Target:  5'- aUGUUGaUGCGGUACg-CGCGaaGGGCg -3'
miRNA:   3'- -ACAACcGCGCCGUGagGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 52136 0.68 0.604337
Target:  5'- aUGUUGGgGUGGCGCgugguccacgCgCGCGcgUGcGGCa -3'
miRNA:   3'- -ACAACCgCGCCGUGa---------G-GCGCa-AC-CCG- -5'
6732 3' -59.1 NC_001875.2 + 84043 0.69 0.584193
Target:  5'- aGUaGGCaGgGGCACUCCGCGcccccgUGcGCg -3'
miRNA:   3'- aCAaCCG-CgCCGUGAGGCGCa-----ACcCG- -5'
6732 3' -59.1 NC_001875.2 + 120923 0.72 0.419345
Target:  5'- -uUUGGCGaCGaGCACUUCGCGguuggacguuugGGGCu -3'
miRNA:   3'- acAACCGC-GC-CGUGAGGCGCaa----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 99529 0.68 0.604337
Target:  5'- ---cGGUGCGGCGCUuuGgccacuUGgcGGGCg -3'
miRNA:   3'- acaaCCGCGCCGUGAggC------GCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 77645 0.72 0.422828
Target:  5'- cGUUGGaCGC-GCcCggCGCGUUGGGCg -3'
miRNA:   3'- aCAACC-GCGcCGuGagGCGCAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 68547 0.69 0.574168
Target:  5'- ---cGGCGuCGGuUugUCgGCGUUGGuGCg -3'
miRNA:   3'- acaaCCGC-GCC-GugAGgCGCAACC-CG- -5'
6732 3' -59.1 NC_001875.2 + 87526 0.68 0.614443
Target:  5'- cGUUGGCGCGcuGCGggucuugaguUUCCGaCaUUGGGCu -3'
miRNA:   3'- aCAACCGCGC--CGU----------GAGGC-GcAACCCG- -5'
6732 3' -59.1 NC_001875.2 + 42072 0.68 0.658963
Target:  5'- ---aGG-GCGGCGCgUCCGCGggccacuauucgcGGGCa -3'
miRNA:   3'- acaaCCgCGCCGUG-AGGCGCaa-----------CCCG- -5'
6732 3' -59.1 NC_001875.2 + 85495 0.71 0.449497
Target:  5'- ---cGGCGuCGGCG-UUCGCGgcGGGCg -3'
miRNA:   3'- acaaCCGC-GCCGUgAGGCGCaaCCCG- -5'
6732 3' -59.1 NC_001875.2 + 31117 0.7 0.505449
Target:  5'- ---aGGCGCaGCGCg-CGCG-UGGGCg -3'
miRNA:   3'- acaaCCGCGcCGUGagGCGCaACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.