Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 21667 | 0.68 | 0.817326 |
Target: 5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3' miRNA: 3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 23796 | 0.66 | 0.894466 |
Target: 5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3' miRNA: 3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 23932 | 0.7 | 0.723419 |
Target: 5'- gCGACCUGggcaACGuGCGCUcuGCGgGCUGCa -3' miRNA: 3'- -GCUGGAC----UGCuUGUGG--CGCgCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 26241 | 0.66 | 0.907274 |
Target: 5'- uGAUUUGAgaaaCGuGACGCC-CGCGCUGCa -3' miRNA: 3'- gCUGGACU----GC-UUGUGGcGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 29572 | 0.71 | 0.662668 |
Target: 5'- gGGCCgcggcGACGAgguGCGCUGCGCGUuuUGCa -3' miRNA: 3'- gCUGGa----CUGCU---UGUGGCGCGCG--AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 30956 | 0.72 | 0.58055 |
Target: 5'- -cGCCaUGGCGccCACgCGCGCGCUGCg -3' miRNA: 3'- gcUGG-ACUGCuuGUG-GCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 31915 | 0.68 | 0.79054 |
Target: 5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3' miRNA: 3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32125 | 0.68 | 0.817326 |
Target: 5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3' miRNA: 3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32226 | 0.69 | 0.771946 |
Target: 5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3' miRNA: 3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32787 | 0.68 | 0.79054 |
Target: 5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3' miRNA: 3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 33463 | 0.73 | 0.539148 |
Target: 5'- cCGGCCagUGGuCGAaaguggcGCGCCGCGCGCUGg- -3' miRNA: 3'- -GCUGG--ACU-GCU-------UGUGGCGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 33525 | 0.7 | 0.733321 |
Target: 5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3' miRNA: 3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 34517 | 0.66 | 0.887713 |
Target: 5'- aCGGCagcaaCUG-CGucucuuGCGCCGCGCGCuUGCUc -3' miRNA: 3'- -GCUG-----GACuGCu-----UGUGGCGCGCG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 35226 | 0.78 | 0.312992 |
Target: 5'- cCGACCUGgccGCGAuuguGCACaaaaagCGCGCGCUGCUg -3' miRNA: 3'- -GCUGGAC---UGCU----UGUG------GCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 35807 | 0.66 | 0.880732 |
Target: 5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3' miRNA: 3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37211 | 0.68 | 0.799624 |
Target: 5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3' miRNA: 3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37356 | 0.71 | 0.621546 |
Target: 5'- gCGGCCgcgcgcucguGCGAACGCgCGCGCcGCUGCa -3' miRNA: 3'- -GCUGGac--------UGCUUGUG-GCGCG-CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37895 | 0.68 | 0.80767 |
Target: 5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3' miRNA: 3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 38457 | 0.7 | 0.737257 |
Target: 5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3' miRNA: 3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 38650 | 0.67 | 0.850626 |
Target: 5'- cCGACUcGcCG--UACCGCGUGCUGCUc -3' miRNA: 3'- -GCUGGaCuGCuuGUGGCGCGCGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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