Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6733 | 3' | -58.1 | NC_001875.2 | + | 68868 | 0.66 | 0.779552 |
Target: 5'- -aUAGCGG--CCGGGCgcgCGGCcGGCGCa -3' miRNA: 3'- gcGUCGCCuuGGUCCG---GCUGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 47826 | 0.66 | 0.77863 |
Target: 5'- gCGCGGCGc-GCCGcGGCCGcguccguGCGuuuGCGCa -3' miRNA: 3'- -GCGUCGCcuUGGU-CCGGC-------UGUu--CGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 76657 | 0.66 | 0.806584 |
Target: 5'- gCGuCAGCGGGAUCAuGGCgGuuaaGgAGGUGCg -3' miRNA: 3'- -GC-GUCGCCUUGGU-CCGgC----UgUUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 37566 | 0.66 | 0.814429 |
Target: 5'- aCGCGGCaucgaguGGAugC--GCCGGCGcgAGCGCc -3' miRNA: 3'- -GCGUCG-------CCUugGucCGGCUGU--UCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 71606 | 0.66 | 0.806584 |
Target: 5'- gCGUGGCGGAcaucaagcgcgaGCUcGGCCGcuucaaucugccGCcGGCGCa -3' miRNA: 3'- -GCGUCGCCU------------UGGuCCGGC------------UGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 92066 | 0.66 | 0.797718 |
Target: 5'- uGCAGCGGuGCaaagacaauggCGGGuUCGGCAacguuuccAGCGCg -3' miRNA: 3'- gCGUCGCCuUG-----------GUCC-GGCUGU--------UCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 12449 | 0.66 | 0.806584 |
Target: 5'- cCGCGGUGGAcGCCAuucagcGGCagcaGAC-GGUGCu -3' miRNA: 3'- -GCGUCGCCU-UGGU------CCGg---CUGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 103260 | 0.66 | 0.805704 |
Target: 5'- gGCGGUGGcuUCGGaguucacGCUGACuAGCGCa -3' miRNA: 3'- gCGUCGCCuuGGUC-------CGGCUGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 73763 | 0.66 | 0.815293 |
Target: 5'- gCGCAcGC---GCCAGaccGCCGAC-AGCGCg -3' miRNA: 3'- -GCGU-CGccuUGGUC---CGGCUGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 16763 | 0.66 | 0.806584 |
Target: 5'- gGguGCGucACCGGGuaGuauauaaaGCGAGCGCg -3' miRNA: 3'- gCguCGCcuUGGUCCggC--------UGUUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 74369 | 0.66 | 0.797718 |
Target: 5'- gGCGuGCGcGGCCGcGGCgCGuuCAGGCGCg -3' miRNA: 3'- gCGU-CGCcUUGGU-CCG-GCu-GUUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 36982 | 0.66 | 0.810087 |
Target: 5'- gCGCcuGGCGu-ACguGGCCGAUAucgccgcaaugaugcAGCGCa -3' miRNA: 3'- -GCG--UCGCcuUGguCCGGCUGU---------------UCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 63363 | 0.66 | 0.779552 |
Target: 5'- aGCAGCGuuGCUAGauguGCaaaGugAAGCGCu -3' miRNA: 3'- gCGUCGCcuUGGUC----CGg--CugUUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 110036 | 0.66 | 0.77863 |
Target: 5'- gCGCggggaugGGCGGcGCCAGcGCCagcuuGGCAAacGCGCg -3' miRNA: 3'- -GCG-------UCGCCuUGGUC-CGG-----CUGUU--CGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 89973 | 0.66 | 0.815293 |
Target: 5'- -aCAG-GGAGCUcauugaaguGGCCGuCAAGCGCc -3' miRNA: 3'- gcGUCgCCUUGGu--------CCGGCuGUUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 50108 | 0.66 | 0.770269 |
Target: 5'- aGCAGCGcGcgcagcuccgacGACCA-GCUGAUuAGCGCg -3' miRNA: 3'- gCGUCGC-C------------UUGGUcCGGCUGuUCGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 45881 | 0.66 | 0.770269 |
Target: 5'- gGCuucGCGuGGACguGGCCaucGGCAGuGCGCg -3' miRNA: 3'- gCGu--CGC-CUUGguCCGG---CUGUU-CGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 102965 | 0.66 | 0.770269 |
Target: 5'- uGCGGCGGcgaCGGGCUaaACGAcGCGCu -3' miRNA: 3'- gCGUCGCCuugGUCCGGc-UGUU-CGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 45610 | 0.66 | 0.797718 |
Target: 5'- gGCuGCGGGcGCCgAGcGCCGAguuCGAcGCGCa -3' miRNA: 3'- gCGuCGCCU-UGG-UC-CGGCU---GUU-CGCG- -5' |
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6733 | 3' | -58.1 | NC_001875.2 | + | 4653 | 0.66 | 0.815293 |
Target: 5'- cCGCAGCGGAgcagacgcaACguGuGCCugaaaGCAuGCGCg -3' miRNA: 3'- -GCGUCGCCU---------UGguC-CGGc----UGUuCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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