miRNA display CGI


Results 21 - 40 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 12326 0.69 0.651956
Target:  5'- gGCGGCGGcGCaCAGcggcuucaGCCGA-AAGCGCu -3'
miRNA:   3'- gCGUCGCCuUG-GUC--------CGGCUgUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 12443 0.67 0.722208
Target:  5'- gGCGGCGu-GCCGgcugcacacgguGGCCuGCAAGUGCu -3'
miRNA:   3'- gCGUCGCcuUGGU------------CCGGcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 12449 0.66 0.806584
Target:  5'- cCGCGGUGGAcGCCAuucagcGGCagcaGAC-GGUGCu -3'
miRNA:   3'- -GCGUCGCCU-UGGU------CCGg---CUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 13142 0.68 0.686354
Target:  5'- uGCAGCGGcgacacGACCAcgcGGUaggcgucgccgaacaCGGCGAGCGUu -3'
miRNA:   3'- gCGUCGCC------UUGGU---CCG---------------GCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16080 0.72 0.454107
Target:  5'- cCGcCAGCuGGGucauguuGCCGGuGCCGGCAaaguAGCGCg -3'
miRNA:   3'- -GC-GUCG-CCU-------UGGUC-CGGCUGU----UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16242 0.71 0.511581
Target:  5'- uGCGGCG--ACgAGGCCGuCAcGCGCg -3'
miRNA:   3'- gCGUCGCcuUGgUCCGGCuGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16763 0.66 0.806584
Target:  5'- gGguGCGucACCGGGuaGuauauaaaGCGAGCGCg -3'
miRNA:   3'- gCguCGCcuUGGUCCggC--------UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18060 0.69 0.621443
Target:  5'- gCGUGGCGGAcaACC-GGCCaagcCAGGUGCu -3'
miRNA:   3'- -GCGUCGCCU--UGGuCCGGcu--GUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18184 0.69 0.611278
Target:  5'- uGUGGCGGuGCC-GGCgGGCGuaGGCGUg -3'
miRNA:   3'- gCGUCGCCuUGGuCCGgCUGU--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18460 0.74 0.345371
Target:  5'- aGCGGCGG--CgGGGCCaAUAAGCGCg -3'
miRNA:   3'- gCGUCGCCuuGgUCCGGcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18653 0.67 0.760864
Target:  5'- uGCGGC-GggUCGGGCgCGGCugcgucgcugcGGCGCg -3'
miRNA:   3'- gCGUCGcCuuGGUCCG-GCUGu----------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18999 0.69 0.651956
Target:  5'- gGCAGUGc-GCgCAGGCCG-CAAcGCGCu -3'
miRNA:   3'- gCGUCGCcuUG-GUCCGGCuGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 19718 0.67 0.71233
Target:  5'- gCGCuGUGG-GCCgAGGCCGuaaACAcguugaAGCGCa -3'
miRNA:   3'- -GCGuCGCCuUGG-UCCGGC---UGU------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 20135 0.66 0.797718
Target:  5'- uGUuGCGuuGCCuuguucGGgCGACGAGCGCa -3'
miRNA:   3'- gCGuCGCcuUGGu-----CCgGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 21337 0.68 0.692381
Target:  5'- uGCgAGCGGGAgCAuuGGCuUGACcAGCGCc -3'
miRNA:   3'- gCG-UCGCCUUgGU--CCG-GCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 23012 0.67 0.760864
Target:  5'- uGCAGCacGGuguCCAGGCUGGac-GCGUa -3'
miRNA:   3'- gCGUCG--CCuu-GGUCCGGCUguuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 23049 0.7 0.550855
Target:  5'- gCGCAGCaGGAugC-GGCCGugugcgauaGCGAuGCGCu -3'
miRNA:   3'- -GCGUCG-CCUugGuCCGGC---------UGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 23261 0.69 0.631616
Target:  5'- gCGCAGCGGccuuuGGCgGGGCagcuGCAcgcGGCGCg -3'
miRNA:   3'- -GCGUCGCC-----UUGgUCCGgc--UGU---UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 26708 0.69 0.621443
Target:  5'- uGCA-CGGAaaucuGCCAGcacGCCGACucAAGCGCc -3'
miRNA:   3'- gCGUcGCCU-----UGGUC---CGGCUG--UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 27306 0.73 0.419251
Target:  5'- aCGCAGCGGcGACCAaGCUGgACGAGCu- -3'
miRNA:   3'- -GCGUCGCC-UUGGUcCGGC-UGUUCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.