miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 239 0.66 0.815293
Target:  5'- gGCGGCGG-AUCGGGC-----GGCGCg -3'
miRNA:   3'- gCGUCGCCuUGGUCCGgcuguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 1030 0.71 0.501939
Target:  5'- gCGUGGCGGGGCCcgAGGCgcacagCGuuGGGCGCa -3'
miRNA:   3'- -GCGUCGCCUUGG--UCCG------GCugUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 1653 0.68 0.702385
Target:  5'- gGCGGCGaGACCauuucAGGCUGAUcaaaGGGCGUu -3'
miRNA:   3'- gCGUCGCcUUGG-----UCCGGCUG----UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 2061 0.66 0.815293
Target:  5'- cCGCAGaCGGugcuCCGGcaaCCGACccGCGCa -3'
miRNA:   3'- -GCGUC-GCCuu--GGUCc--GGCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 3988 0.66 0.788705
Target:  5'- gGCuGCGG--CCGcGCCGGCGuGCGCc -3'
miRNA:   3'- gCGuCGCCuuGGUcCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 4653 0.66 0.815293
Target:  5'- cCGCAGCGGAgcagacgcaACguGuGCCugaaaGCAuGCGCg -3'
miRNA:   3'- -GCGUCGCCU---------UGguC-CGGc----UGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 4699 0.7 0.591001
Target:  5'- gGCGGCccccaaaccgcaGGAACCGcaGCCGGCGGuGCGCc -3'
miRNA:   3'- gCGUCG------------CCUUGGUc-CGGCUGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 4861 0.67 0.759918
Target:  5'- gCGCGuGUGGAACCccgcggcGGGCauCGACGGGCu- -3'
miRNA:   3'- -GCGU-CGCCUUGG-------UCCG--GCUGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 6458 0.66 0.770269
Target:  5'- aGCGcGCGGuguucgUCAGGUCGAUuacGGCGCc -3'
miRNA:   3'- gCGU-CGCCuu----GGUCCGGCUGu--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 7070 0.67 0.732009
Target:  5'- uGCGGCGacGCCAccGGCCugugcgcaGACAugcAGCGCg -3'
miRNA:   3'- gCGUCGCcuUGGU--CCGG--------CUGU---UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 7206 1.12 0.000964
Target:  5'- cCGCAGCGGAACCAGGCCGACAAGCGCg -3'
miRNA:   3'- -GCGUCGCCUUGGUCCGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 7259 0.66 0.815293
Target:  5'- uGCAGCGGccuGGCgCGGGUCGcCGAcGUGUu -3'
miRNA:   3'- gCGUCGCC---UUG-GUCCGGCuGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 7275 0.66 0.797718
Target:  5'- gGCaAGCGGcGCguGGCggucaauguCGGCAGcGCGCg -3'
miRNA:   3'- gCG-UCGCCuUGguCCG---------GCUGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 7418 0.7 0.560824
Target:  5'- aCGuCGGCGacccgcGCCAGGCCGcuGC-AGCGCg -3'
miRNA:   3'- -GC-GUCGCcu----UGGUCCGGC--UGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 7459 0.7 0.591001
Target:  5'- uGCGGCGGuguacGGCCGAUucuGCGCc -3'
miRNA:   3'- gCGUCGCCuugguCCGGCUGuu-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 9246 0.68 0.662107
Target:  5'- gGCuGUGGAACgccGCCGACGAGCa- -3'
miRNA:   3'- gCGuCGCCUUGgucCGGCUGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 10537 0.79 0.180553
Target:  5'- gCGCGGCGGcguucaaaguuuucGGCCAGGCCGuagcCcGGCGCa -3'
miRNA:   3'- -GCGUCGCC--------------UUGGUCCGGCu---GuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 10663 0.71 0.531086
Target:  5'- gGCGGCGGAcugcACUuGGC--GCAGGCGCu -3'
miRNA:   3'- gCGUCGCCU----UGGuCCGgcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 11253 0.7 0.550855
Target:  5'- uGCGGCGccgaGACgGGGCCGuguccaGGGCGCg -3'
miRNA:   3'- gCGUCGCc---UUGgUCCGGCug----UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 11985 0.67 0.71233
Target:  5'- gCGaCGGCGuuGGGCgCGGGUguggUGGCGAGCGCg -3'
miRNA:   3'- -GC-GUCGC--CUUG-GUCCG----GCUGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.