miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 7206 1.12 0.000964
Target:  5'- cCGCAGCGGAACCAGGCCGACAAGCGCg -3'
miRNA:   3'- -GCGUCGCCUUGGUCCGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 43481 0.81 0.127439
Target:  5'- gCGCGGCGGcAACCAcGCCGACccGCGCg -3'
miRNA:   3'- -GCGUCGCC-UUGGUcCGGCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 10537 0.79 0.180553
Target:  5'- gCGCGGCGGcguucaaaguuuucGGCCAGGCCGuagcCcGGCGCa -3'
miRNA:   3'- -GCGUCGCC--------------UUGGUCCGGCu---GuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 39643 0.78 0.211031
Target:  5'- gCGCAGC-GAACCgcgcgcgaguuuGGGCCGGCGGcGCGCg -3'
miRNA:   3'- -GCGUCGcCUUGG------------UCCGGCUGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 72580 0.78 0.211031
Target:  5'- gCGCuGCGGGugCGGGCgCuGCGGGCGCu -3'
miRNA:   3'- -GCGuCGCCUugGUCCG-GcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 54034 0.77 0.221057
Target:  5'- cCGCGGCGGcgcgcacGACCaacAGGCCGACGgugccAGCGUg -3'
miRNA:   3'- -GCGUCGCC-------UUGG---UCCGGCUGU-----UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122744 0.77 0.226495
Target:  5'- uCGUGGCGGggUUAGcGCCGACucgccacAGGCGCa -3'
miRNA:   3'- -GCGUCGCCuuGGUC-CGGCUG-------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 35404 0.77 0.227045
Target:  5'- gGCGcGCGcGAGCgAcGCCGACAAGCGCg -3'
miRNA:   3'- gCGU-CGC-CUUGgUcCGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 45755 0.77 0.238284
Target:  5'- aCGCGGCGccGAGCCcgacaccgAGGUCGuCAAGCGCg -3'
miRNA:   3'- -GCGUCGC--CUUGG--------UCCGGCuGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 70184 0.75 0.301557
Target:  5'- gCGCAGC-GAGCCGGGCggCGACGgcgaccacugGGCGCc -3'
miRNA:   3'- -GCGUCGcCUUGGUCCG--GCUGU----------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18460 0.74 0.345371
Target:  5'- aGCGGCGG--CgGGGCCaAUAAGCGCg -3'
miRNA:   3'- gCGUCGCCuuGgUCCGGcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 117340 0.74 0.377026
Target:  5'- gCGCGGCGcgggcGAACCggcGGGCCGGCuggccgucggggAGGCGCc -3'
miRNA:   3'- -GCGUCGC-----CUUGG---UCCGGCUG------------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 109423 0.74 0.377026
Target:  5'- aGCAaCGGAugCAGGCCGuguacGCGCg -3'
miRNA:   3'- gCGUcGCCUugGUCCGGCuguu-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 99530 0.73 0.402017
Target:  5'- cCGguGCGGcGCUuuGGCCacuuGGCGGGCGCg -3'
miRNA:   3'- -GCguCGCCuUGGu-CCGG----CUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 110324 0.73 0.402017
Target:  5'- gCGCAGUGcGAcGCC-GcCCGACGAGCGCg -3'
miRNA:   3'- -GCGUCGC-CU-UGGuCcGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 64995 0.73 0.410578
Target:  5'- gCGCAGCGacacAAUCGGGCUcaagcGCAAGCGCa -3'
miRNA:   3'- -GCGUCGCc---UUGGUCCGGc----UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 27306 0.73 0.419251
Target:  5'- aCGCAGCGGcGACCAaGCUGgACGAGCu- -3'
miRNA:   3'- -GCGUCGCC-UUGGUcCGGC-UGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 87447 0.72 0.436926
Target:  5'- gCGCGGCGu-GCCGGGCugcauugaauCGACuAGCGCc -3'
miRNA:   3'- -GCGUCGCcuUGGUCCG----------GCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 37972 0.72 0.436926
Target:  5'- aCGCGGCGGccugcgcGCuCAGcGCCGACAaccguuGGUGCa -3'
miRNA:   3'- -GCGUCGCCu------UG-GUC-CGGCUGU------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 49571 0.72 0.436926
Target:  5'- uGUAGUGGccAAgCAGcugcgcGCCGACGAGCGCu -3'
miRNA:   3'- gCGUCGCC--UUgGUC------CGGCUGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.