miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 50834 0.72 0.445923
Target:  5'- aGCAgGCGccuuUCGGGCCGACGgccAGCGCa -3'
miRNA:   3'- gCGU-CGCcuu-GGUCCGGCUGU---UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16080 0.72 0.454107
Target:  5'- cCGcCAGCuGGGucauguuGCCGGuGCCGGCAaaguAGCGCg -3'
miRNA:   3'- -GC-GUCG-CCU-------UGGUC-CGGCUGU----UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 65450 0.72 0.455022
Target:  5'- gGCGGuCGGuGGCCAGGUCGaACAcGUGCu -3'
miRNA:   3'- gCGUC-GCC-UUGGUCCGGC-UGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 98063 0.72 0.455022
Target:  5'- aCGCAGCGGgcgUCGGcGCCGACGccCGCa -3'
miRNA:   3'- -GCGUCGCCuu-GGUC-CGGCUGUucGCG- -5'
6733 3' -58.1 NC_001875.2 + 85221 0.72 0.464221
Target:  5'- cCGC-GCGGuagcGCCGcauGUCGACGAGCGCg -3'
miRNA:   3'- -GCGuCGCCu---UGGUc--CGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 43604 0.72 0.469786
Target:  5'- cCGCAGCGaGGACCucaccgaguggauGGCCGAgGAcggcacgcacGCGCa -3'
miRNA:   3'- -GCGUCGC-CUUGGu------------CCGGCUgUU----------CGCG- -5'
6733 3' -58.1 NC_001875.2 + 59088 0.72 0.472582
Target:  5'- gGC-GCGGAAacgguuuCCAGGCUGAC-GGCGUc -3'
miRNA:   3'- gCGuCGCCUU-------GGUCCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 65861 0.72 0.473515
Target:  5'- cCGCccGCGGAACaguGGUCGGCcGGCGUg -3'
miRNA:   3'- -GCGu-CGCCUUGgu-CCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 85301 0.72 0.473515
Target:  5'- gGCGGCGcGGGCgCGGGCauugccGCGGGCGCu -3'
miRNA:   3'- gCGUCGC-CUUG-GUCCGgc----UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 42327 0.71 0.492378
Target:  5'- gCGCccAGCGGccCCAGGCgGA--AGCGCa -3'
miRNA:   3'- -GCG--UCGCCuuGGUCCGgCUguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 82651 0.71 0.492378
Target:  5'- uGCAGCGuGGGCggCGGGCCGu--GGUGCa -3'
miRNA:   3'- gCGUCGC-CUUG--GUCCGGCuguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 48429 0.71 0.501939
Target:  5'- aCGCGGCGGAcacAUgAGGugucCCGGCGgGGCGCc -3'
miRNA:   3'- -GCGUCGCCU---UGgUCC----GGCUGU-UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 125001 0.71 0.501939
Target:  5'- cCGguGUGGGuguGCUgcuGGCCGGC-GGCGCg -3'
miRNA:   3'- -GCguCGCCU---UGGu--CCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 1030 0.71 0.501939
Target:  5'- gCGUGGCGGGGCCcgAGGCgcacagCGuuGGGCGCa -3'
miRNA:   3'- -GCGUCGCCUUGG--UCCG------GCugUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16242 0.71 0.511581
Target:  5'- uGCGGCG--ACgAGGCCGuCAcGCGCg -3'
miRNA:   3'- gCGUCGCcuUGgUCCGGCuGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 29052 0.71 0.511581
Target:  5'- uCGCAGCGGucguACCA-GCgGGCGuguugcugccacGGCGCg -3'
miRNA:   3'- -GCGUCGCCu---UGGUcCGgCUGU------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 32785 0.71 0.511581
Target:  5'- gCGCGGCGuGGgcgggcGCCGcGCCGGCAAGCucgGCg -3'
miRNA:   3'- -GCGUCGC-CU------UGGUcCGGCUGUUCG---CG- -5'
6733 3' -58.1 NC_001875.2 + 42265 0.71 0.511581
Target:  5'- -uCAGCGGAcugcGCC-GGCCGuACGAGUGUu -3'
miRNA:   3'- gcGUCGCCU----UGGuCCGGC-UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 72428 0.71 0.518375
Target:  5'- -uCGGUGGAuguguugcgcugcaGCguGGCCGACGuGCGCg -3'
miRNA:   3'- gcGUCGCCU--------------UGguCCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 74648 0.71 0.520323
Target:  5'- gGCAGCGu-GCCAuGGCCGgggcuggGCGAGCuGCg -3'
miRNA:   3'- gCGUCGCcuUGGU-CCGGC-------UGUUCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.