miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 10663 0.71 0.531086
Target:  5'- gGCGGCGGAcugcACUuGGC--GCAGGCGCu -3'
miRNA:   3'- gCGUCGCCU----UGGuCCGgcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 59088 0.72 0.472582
Target:  5'- gGC-GCGGAAacgguuuCCAGGCUGAC-GGCGUc -3'
miRNA:   3'- gCGuCGCCUU-------GGUCCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 85301 0.72 0.473515
Target:  5'- gGCGGCGcGGGCgCGGGCauugccGCGGGCGCu -3'
miRNA:   3'- gCGUCGC-CUUG-GUCCGgc----UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 42327 0.71 0.492378
Target:  5'- gCGCccAGCGGccCCAGGCgGA--AGCGCa -3'
miRNA:   3'- -GCG--UCGCCuuGGUCCGgCUguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 1030 0.71 0.501939
Target:  5'- gCGUGGCGGGGCCcgAGGCgcacagCGuuGGGCGCa -3'
miRNA:   3'- -GCGUCGCCUUGG--UCCG------GCugUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16242 0.71 0.511581
Target:  5'- uGCGGCG--ACgAGGCCGuCAcGCGCg -3'
miRNA:   3'- gCGUCGCcuUGgUCCGGCuGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 29052 0.71 0.511581
Target:  5'- uCGCAGCGGucguACCA-GCgGGCGuguugcugccacGGCGCg -3'
miRNA:   3'- -GCGUCGCCu---UGGUcCGgCUGU------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 32785 0.71 0.511581
Target:  5'- gCGCGGCGuGGgcgggcGCCGcGCCGGCAAGCucgGCg -3'
miRNA:   3'- -GCGUCGC-CU------UGGUcCGGCUGUUCG---CG- -5'
6733 3' -58.1 NC_001875.2 + 74648 0.71 0.520323
Target:  5'- gGCAGCGu-GCCAuGGCCGgggcuggGCGAGCuGCg -3'
miRNA:   3'- gCGUCGCcuUGGU-CCGGC-------UGUUCG-CG- -5'
6733 3' -58.1 NC_001875.2 + 85221 0.72 0.464221
Target:  5'- cCGC-GCGGuagcGCCGcauGUCGACGAGCGCg -3'
miRNA:   3'- -GCGuCGCCu---UGGUc--CGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 65450 0.72 0.455022
Target:  5'- gGCGGuCGGuGGCCAGGUCGaACAcGUGCu -3'
miRNA:   3'- gCGUC-GCC-UUGGUCCGGC-UGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 37972 0.72 0.436926
Target:  5'- aCGCGGCGGccugcgcGCuCAGcGCCGACAaccguuGGUGCa -3'
miRNA:   3'- -GCGUCGCCu------UG-GUC-CGGCUGU------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 72580 0.78 0.211031
Target:  5'- gCGCuGCGGGugCGGGCgCuGCGGGCGCu -3'
miRNA:   3'- -GCGuCGCCUugGUCCG-GcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122744 0.77 0.226495
Target:  5'- uCGUGGCGGggUUAGcGCCGACucgccacAGGCGCa -3'
miRNA:   3'- -GCGUCGCCuuGGUC-CGGCUG-------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 35404 0.77 0.227045
Target:  5'- gGCGcGCGcGAGCgAcGCCGACAAGCGCg -3'
miRNA:   3'- gCGU-CGC-CUUGgUcCGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 45755 0.77 0.238284
Target:  5'- aCGCGGCGccGAGCCcgacaccgAGGUCGuCAAGCGCg -3'
miRNA:   3'- -GCGUCGC--CUUGG--------UCCGGCuGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 70184 0.75 0.301557
Target:  5'- gCGCAGC-GAGCCGGGCggCGACGgcgaccacugGGCGCc -3'
miRNA:   3'- -GCGUCGcCUUGGUCCG--GCUGU----------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 109423 0.74 0.377026
Target:  5'- aGCAaCGGAugCAGGCCGuguacGCGCg -3'
miRNA:   3'- gCGUcGCCUugGUCCGGCuguu-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 117340 0.74 0.377026
Target:  5'- gCGCGGCGcgggcGAACCggcGGGCCGGCuggccgucggggAGGCGCc -3'
miRNA:   3'- -GCGUCGC-----CUUGG---UCCGGCUG------------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 49571 0.72 0.436926
Target:  5'- uGUAGUGGccAAgCAGcugcgcGCCGACGAGCGCu -3'
miRNA:   3'- gCGUCGCC--UUgGUC------CGGCUGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.