miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 67172 0.66 0.779552
Target:  5'- gCGUGGUGGAcACCGcGGUCGGguAGcCGCu -3'
miRNA:   3'- -GCGUCGCCU-UGGU-CCGGCUguUC-GCG- -5'
6733 3' -58.1 NC_001875.2 + 76657 0.66 0.806584
Target:  5'- gCGuCAGCGGGAUCAuGGCgGuuaaGgAGGUGCg -3'
miRNA:   3'- -GC-GUCGCCUUGGU-CCGgC----UgUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 20135 0.66 0.797718
Target:  5'- uGUuGCGuuGCCuuguucGGgCGACGAGCGCa -3'
miRNA:   3'- gCGuCGCcuUGGu-----CCgGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 43313 0.66 0.779552
Target:  5'- aGCGGCGcGcGCgCGGGUCGGCGugguugccgccGCGCa -3'
miRNA:   3'- gCGUCGC-CuUG-GUCCGGCUGUu----------CGCG- -5'
6733 3' -58.1 NC_001875.2 + 6458 0.66 0.770269
Target:  5'- aGCGcGCGGuguucgUCAGGUCGAUuacGGCGCc -3'
miRNA:   3'- gCGU-CGCCuu----GGUCCGGCUGu--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 84388 0.66 0.788705
Target:  5'- gGCGGCgucGGuAGCCGGaGCuuCGGCGgcGGCGCg -3'
miRNA:   3'- gCGUCG---CC-UUGGUC-CG--GCUGU--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 103260 0.66 0.805704
Target:  5'- gGCGGUGGcuUCGGaguucacGCUGACuAGCGCa -3'
miRNA:   3'- gCGUCGCCuuGGUC-------CGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 92066 0.66 0.797718
Target:  5'- uGCAGCGGuGCaaagacaauggCGGGuUCGGCAacguuuccAGCGCg -3'
miRNA:   3'- gCGUCGCCuUG-----------GUCC-GGCUGU--------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 39166 0.66 0.797718
Target:  5'- gGCcGC-GAGgCGGGCCGGCGGuuGCGUg -3'
miRNA:   3'- gCGuCGcCUUgGUCCGGCUGUU--CGCG- -5'
6733 3' -58.1 NC_001875.2 + 69736 0.66 0.779552
Target:  5'- uGCA-CGGAAUCGGGCggCGACcuGCuGCg -3'
miRNA:   3'- gCGUcGCCUUGGUCCG--GCUGuuCG-CG- -5'
6733 3' -58.1 NC_001875.2 + 16763 0.66 0.806584
Target:  5'- gGguGCGucACCGGGuaGuauauaaaGCGAGCGCg -3'
miRNA:   3'- gCguCGCcuUGGUCCggC--------UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 74369 0.66 0.797718
Target:  5'- gGCGuGCGcGGCCGcGGCgCGuuCAGGCGCg -3'
miRNA:   3'- gCGU-CGCcUUGGU-CCG-GCu-GUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 99391 0.66 0.770269
Target:  5'- cCGCaccGGCGGcGCCagcGGGUCG-CGcAGCGCa -3'
miRNA:   3'- -GCG---UCGCCuUGG---UCCGGCuGU-UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122793 0.66 0.787796
Target:  5'- gGC-GCGGaAACCGgcgcGGCCGGCGgcuccaaacgcaaGGCGUc -3'
miRNA:   3'- gCGuCGCC-UUGGU----CCGGCUGU-------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 33456 0.66 0.788705
Target:  5'- aGC-GCGGccGGCCAguGGUCGAaaguGGCGCg -3'
miRNA:   3'- gCGuCGCC--UUGGU--CCGGCUgu--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 30824 0.66 0.770269
Target:  5'- gCGCGGCGGcaaaCAGGuuGuu--GCGCa -3'
miRNA:   3'- -GCGUCGCCuug-GUCCggCuguuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 50019 0.66 0.779552
Target:  5'- gCGCGcGUGGucGCCGGGC-GGCGAG-GCg -3'
miRNA:   3'- -GCGU-CGCCu-UGGUCCGgCUGUUCgCG- -5'
6733 3' -58.1 NC_001875.2 + 71606 0.66 0.806584
Target:  5'- gCGUGGCGGAcaucaagcgcgaGCUcGGCCGcuucaaucugccGCcGGCGCa -3'
miRNA:   3'- -GCGUCGCCU------------UGGuCCGGC------------UGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 12449 0.66 0.806584
Target:  5'- cCGCGGUGGAcGCCAuucagcGGCagcaGAC-GGUGCu -3'
miRNA:   3'- -GCGUCGCCU-UGGU------CCGg---CUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 111699 0.66 0.776781
Target:  5'- gGUAGCGuu-CCAGcgcuggaaauucccGCCGACGuGCGCg -3'
miRNA:   3'- gCGUCGCcuuGGUC--------------CGGCUGUuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.