miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 7206 1.12 0.000964
Target:  5'- cCGCAGCGGAACCAGGCCGACAAGCGCg -3'
miRNA:   3'- -GCGUCGCCUUGGUCCGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 48429 0.71 0.501939
Target:  5'- aCGCGGCGGAcacAUgAGGugucCCGGCGgGGCGCc -3'
miRNA:   3'- -GCGUCGCCU---UGgUCC----GGCUGU-UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 72428 0.71 0.518375
Target:  5'- -uCGGUGGAuguguugcgcugcaGCguGGCCGACGuGCGCg -3'
miRNA:   3'- gcGUCGCCU--------------UGguCCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 4653 0.66 0.815293
Target:  5'- cCGCAGCGGAgcagacgcaACguGuGCCugaaaGCAuGCGCg -3'
miRNA:   3'- -GCGUCGCCU---------UGguC-CGGc----UGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18460 0.74 0.345371
Target:  5'- aGCGGCGG--CgGGGCCaAUAAGCGCg -3'
miRNA:   3'- gCGUCGCCuuGgUCCGGcUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 110324 0.73 0.402017
Target:  5'- gCGCAGUGcGAcGCC-GcCCGACGAGCGCg -3'
miRNA:   3'- -GCGUCGC-CU-UGGuCcGGCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 64995 0.73 0.410578
Target:  5'- gCGCAGCGacacAAUCGGGCUcaagcGCAAGCGCa -3'
miRNA:   3'- -GCGUCGCc---UUGGUCCGGc----UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 27306 0.73 0.419251
Target:  5'- aCGCAGCGGcGACCAaGCUGgACGAGCu- -3'
miRNA:   3'- -GCGUCGCC-UUGGUcCGGC-UGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 16080 0.72 0.454107
Target:  5'- cCGcCAGCuGGGucauguuGCCGGuGCCGGCAaaguAGCGCg -3'
miRNA:   3'- -GC-GUCG-CCU-------UGGUC-CGGCUGU----UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 125001 0.71 0.501939
Target:  5'- cCGguGUGGGuguGCUgcuGGCCGGC-GGCGCg -3'
miRNA:   3'- -GCguCGCCU---UGGu--CCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 43604 0.72 0.469786
Target:  5'- cCGCAGCGaGGACCucaccgaguggauGGCCGAgGAcggcacgcacGCGCa -3'
miRNA:   3'- -GCGUCGC-CUUGGu------------CCGGCUgUU----------CGCG- -5'
6733 3' -58.1 NC_001875.2 + 50834 0.72 0.445923
Target:  5'- aGCAgGCGccuuUCGGGCCGACGgccAGCGCa -3'
miRNA:   3'- gCGU-CGCcuu-GGUCCGGCUGU---UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 43481 0.81 0.127439
Target:  5'- gCGCGGCGGcAACCAcGCCGACccGCGCg -3'
miRNA:   3'- -GCGUCGCC-UUGGUcCGGCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 65861 0.72 0.473515
Target:  5'- cCGCccGCGGAACaguGGUCGGCcGGCGUg -3'
miRNA:   3'- -GCGu-CGCCUUGgu-CCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 10537 0.79 0.180553
Target:  5'- gCGCGGCGGcguucaaaguuuucGGCCAGGCCGuagcCcGGCGCa -3'
miRNA:   3'- -GCGUCGCC--------------UUGGUCCGGCu---GuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 87447 0.72 0.436926
Target:  5'- gCGCGGCGu-GCCGGGCugcauugaauCGACuAGCGCc -3'
miRNA:   3'- -GCGUCGCcuUGGUCCG----------GCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 82651 0.71 0.492378
Target:  5'- uGCAGCGuGGGCggCGGGCCGu--GGUGCa -3'
miRNA:   3'- gCGUCGC-CUUG--GUCCGGCuguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 42265 0.71 0.511581
Target:  5'- -uCAGCGGAcugcGCC-GGCCGuACGAGUGUu -3'
miRNA:   3'- gcGUCGCCU----UGGuCCGGC-UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 54034 0.77 0.221057
Target:  5'- cCGCGGCGGcgcgcacGACCaacAGGCCGACGgugccAGCGUg -3'
miRNA:   3'- -GCGUCGCC-------UUGG---UCCGGCUGU-----UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 99530 0.73 0.402017
Target:  5'- cCGguGCGGcGCUuuGGCCacuuGGCGGGCGCg -3'
miRNA:   3'- -GCguCGCCuUGGu-CCGG----CUGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.