miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 131432 0.67 0.722208
Target:  5'- gCGCAGCuGGA--CAGGUCGG-AAGCGUu -3'
miRNA:   3'- -GCGUCG-CCUugGUCCGGCUgUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 129155 0.67 0.760864
Target:  5'- aGUAGCuGGGcgaauaguuuaACaGGGUgGGCGAGCGCg -3'
miRNA:   3'- gCGUCG-CCU-----------UGgUCCGgCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 128930 0.7 0.54094
Target:  5'- gCGCAGCGGcgcGCCGGGgucgcccaCGGCGugcacgcgccggGGCGCg -3'
miRNA:   3'- -GCGUCGCCu--UGGUCCg-------GCUGU------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 128879 0.68 0.702385
Target:  5'- uCGCGGCGcaGACCuGGgCGGCGAagcccgcuGCGCg -3'
miRNA:   3'- -GCGUCGCc-UUGGuCCgGCUGUU--------CGCG- -5'
6733 3' -58.1 NC_001875.2 + 128713 0.69 0.611278
Target:  5'- gCGCAGCGGGcuucgccgcCCAGGUCugcgcGCGAGcCGCg -3'
miRNA:   3'- -GCGUCGCCUu--------GGUCCGGc----UGUUC-GCG- -5'
6733 3' -58.1 NC_001875.2 + 125001 0.71 0.501939
Target:  5'- cCGguGUGGGuguGCUgcuGGCCGGC-GGCGCg -3'
miRNA:   3'- -GCguCGCCU---UGGu--CCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 124879 0.67 0.760864
Target:  5'- gGCGGCGaAAC--GGCCGACGcGUGCc -3'
miRNA:   3'- gCGUCGCcUUGguCCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 124813 0.66 0.815293
Target:  5'- gCGUGGCGGcGCUaaAGGUCaGAUAcGCGCc -3'
miRNA:   3'- -GCGUCGCCuUGG--UCCGG-CUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122793 0.66 0.787796
Target:  5'- gGC-GCGGaAACCGgcgcGGCCGGCGgcuccaaacgcaaGGCGUc -3'
miRNA:   3'- gCGuCGCC-UUGGU----CCGGCUGU-------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122744 0.77 0.226495
Target:  5'- uCGUGGCGGggUUAGcGCCGACucgccacAGGCGCa -3'
miRNA:   3'- -GCGUCGCCuuGGUC-CGGCUG-------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 122101 0.69 0.621443
Target:  5'- gGCGGUGGAcgcucaacacguGCCAcgcuucgggcgcGGCgCGGCcGGCGCg -3'
miRNA:   3'- gCGUCGCCU------------UGGU------------CCG-GCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 118091 0.69 0.631616
Target:  5'- aCGCGGCGGcGCgCAcGCCGGCcuGCaGCu -3'
miRNA:   3'- -GCGUCGCCuUG-GUcCGGCUGuuCG-CG- -5'
6733 3' -58.1 NC_001875.2 + 117921 0.68 0.692381
Target:  5'- -aCAGaCGGcaAGCugCAGGCCGGCGuGCGCg -3'
miRNA:   3'- gcGUC-GCC--UUG--GUCCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 117340 0.74 0.377026
Target:  5'- gCGCGGCGcgggcGAACCggcGGGCCGGCuggccgucggggAGGCGCc -3'
miRNA:   3'- -GCGUCGC-----CUUGG---UCCGGCUG------------UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 113841 0.68 0.702385
Target:  5'- aGCGGguCGGggUCGGGCCGcacguugaacGCGGGCa- -3'
miRNA:   3'- gCGUC--GCCuuGGUCCGGC----------UGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 113613 0.68 0.662107
Target:  5'- gGCGGCGG-GCCGcGGCggcaagagCGGCGacGGCGCc -3'
miRNA:   3'- gCGUCGCCuUGGU-CCG--------GCUGU--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 112048 0.66 0.815293
Target:  5'- aGCGGcCGGcGCgAcGGuCCGGCcGGCGCc -3'
miRNA:   3'- gCGUC-GCCuUGgU-CC-GGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 112002 0.69 0.601128
Target:  5'- gCGUGGCcaGAcACCuGGCCGGCucGCGCa -3'
miRNA:   3'- -GCGUCGc-CU-UGGuCCGGCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 111792 0.7 0.54094
Target:  5'- uGaCGGCGGuGCaCGcGGCCGACG-GCGCc -3'
miRNA:   3'- gC-GUCGCCuUG-GU-CCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 111699 0.66 0.776781
Target:  5'- gGUAGCGuu-CCAGcgcuggaaauucccGCCGACGuGCGCg -3'
miRNA:   3'- gCGUCGCcuuGGUC--------------CGGCUGUuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.