miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 64562 0.66 0.82341
Target:  5'- gUGCuggCCGGCGACUcgugguucaucaaGCGCGCCACc -3'
miRNA:   3'- aAUGca-GGUCGUUGAc------------CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 42949 0.66 0.809377
Target:  5'- gUGCGU-CAGCAGCccgcgcaGCGCGCCAa- -3'
miRNA:   3'- aAUGCAgGUCGUUGac-----CGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 54568 0.66 0.814691
Target:  5'- cUGCGcCgCGGCGGCcgcuucgcccggcGGCGCGcCCACGg -3'
miRNA:   3'- aAUGCaG-GUCGUUGa------------CCGCGC-GGUGC- -5'
6733 5' -57.2 NC_001875.2 + 48854 0.66 0.809377
Target:  5'- --cCG-CCGGCGAC-GaGCgGCGCCGCGa -3'
miRNA:   3'- aauGCaGGUCGUUGaC-CG-CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 4265 0.66 0.809377
Target:  5'- -gGCGUCCAuccuguaaaaguGCAGCa-GCGCGCCGa- -3'
miRNA:   3'- aaUGCAGGU------------CGUUGacCGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 82997 0.66 0.785688
Target:  5'- aUUGCGUCgaaauaCGGCGucaGCUGGaccgcgcgcagcgagUGCGCCACGu -3'
miRNA:   3'- -AAUGCAG------GUCGU---UGACC---------------GCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 246 0.66 0.817325
Target:  5'- -cACGUUuuucagcgCGGCGgggucguuguauuGCUGGCGuCGCCGCa -3'
miRNA:   3'- aaUGCAG--------GUCGU-------------UGACCGC-GCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 115747 0.66 0.809377
Target:  5'- aUAUGUCCuAGCGGC--GUGCGCCAa- -3'
miRNA:   3'- aAUGCAGG-UCGUUGacCGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 126378 0.66 0.808485
Target:  5'- -----aCCAGCAgaggaaaGCUGGCuGCGCaCACGu -3'
miRNA:   3'- aaugcaGGUCGU-------UGACCG-CGCG-GUGC- -5'
6733 5' -57.2 NC_001875.2 + 99398 0.66 0.818199
Target:  5'- -gGCGgcgCCAGCGggucGCgcagcgcauuguUGGCcaGCGCCGCGa -3'
miRNA:   3'- aaUGCa--GGUCGU----UG------------ACCG--CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 96197 0.66 0.826848
Target:  5'- -cGCGcaaaCAGUuaAACUcGCGCGCCACGc -3'
miRNA:   3'- aaUGCag--GUCG--UUGAcCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 117320 0.66 0.818199
Target:  5'- --uUGUUgAGCGGCUugacacGGCGCGgCGCGg -3'
miRNA:   3'- aauGCAGgUCGUUGA------CCGCGCgGUGC- -5'
6733 5' -57.2 NC_001875.2 + 80582 0.66 0.826848
Target:  5'- cUGCGUUCucGCuGCUGGCGgaaagaaugguCGUCACGg -3'
miRNA:   3'- aAUGCAGGu-CGuUGACCGC-----------GCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 4425 0.66 0.826848
Target:  5'- -cACGg-CGGCAuGCUGacGCGCGCCGCc -3'
miRNA:   3'- aaUGCagGUCGU-UGAC--CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 32098 0.66 0.826848
Target:  5'- -cGCGUCaCAGCAcgagcACgacaaGGCGCGCacuuGCGa -3'
miRNA:   3'- aaUGCAG-GUCGU-----UGa----CCGCGCGg---UGC- -5'
6733 5' -57.2 NC_001875.2 + 39174 0.66 0.781018
Target:  5'- -gGCGggCCGGCggUUgcguggcguuuacGGUGCGCCGCu -3'
miRNA:   3'- aaUGCa-GGUCGuuGA-------------CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 85681 0.66 0.826848
Target:  5'- -gGCcUgCAGCGACUcgaccagcuuGCGCGCCGCGa -3'
miRNA:   3'- aaUGcAgGUCGUUGAc---------CGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 113166 0.66 0.825991
Target:  5'- gUACGUuucgcCCAGCAGCcgcaccgUGaCGCGCUGCGa -3'
miRNA:   3'- aAUGCA-----GGUCGUUG-------ACcGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 113377 0.66 0.826848
Target:  5'- aUUGCccggUCAGCGGCgcgcgauucGCGCGCCACGc -3'
miRNA:   3'- -AAUGca--GGUCGUUGac-------CGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 42842 0.66 0.818199
Target:  5'- -cGCGUagCGcGCAAauccGGCGCGCCGCa -3'
miRNA:   3'- aaUGCAg-GU-CGUUga--CCGCGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.