miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 246 0.66 0.817325
Target:  5'- -cACGUUuuucagcgCGGCGgggucguuguauuGCUGGCGuCGCCGCa -3'
miRNA:   3'- aaUGCAG--------GUCGU-------------UGACCGC-GCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 247 0.66 0.791246
Target:  5'- aUugGgCCGGCGGCggaucgggcGGCGCGUCAUu -3'
miRNA:   3'- aAugCaGGUCGUUGa--------CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 1341 0.66 0.809377
Target:  5'- aUGCgGUUCAGCG--UGGCaaaGUGCCGCGa -3'
miRNA:   3'- aAUG-CAGGUCGUugACCG---CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 4265 0.66 0.809377
Target:  5'- -gGCGUCCAuccuguaaaaguGCAGCa-GCGCGCCGa- -3'
miRNA:   3'- aaUGCAGGU------------CGUUGacCGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 4425 0.66 0.826848
Target:  5'- -cACGg-CGGCAuGCUGacGCGCGCCGCc -3'
miRNA:   3'- aaUGCagGUCGU-UGAC--CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 5514 0.66 0.788473
Target:  5'- -cACGUCCAGCGGgUGGUcaaugaccagcaccGCcCCGCa -3'
miRNA:   3'- aaUGCAGGUCGUUgACCG--------------CGcGGUGc -5'
6733 5' -57.2 NC_001875.2 + 5914 0.69 0.65207
Target:  5'- -aGCG-CCGGCAugGCguugGGUaGCGCCGCGc -3'
miRNA:   3'- aaUGCaGGUCGU--UGa---CCG-CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 6656 0.71 0.499282
Target:  5'- -gGCGgCCAGCGugUuGGCGCGgCACu -3'
miRNA:   3'- aaUGCaGGUCGUugA-CCGCGCgGUGc -5'
6733 5' -57.2 NC_001875.2 + 7167 1.06 0.002753
Target:  5'- cUUACGUCCAGCAACUGGCGCGCCACGu -3'
miRNA:   3'- -AAUGCAGGUCGUUGACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 7282 0.67 0.753291
Target:  5'- -cGCGcCUGGCAAgcGGCGCGUgGCGg -3'
miRNA:   3'- aaUGCaGGUCGUUgaCCGCGCGgUGC- -5'
6733 5' -57.2 NC_001875.2 + 8995 0.68 0.69122
Target:  5'- gUGCG-CCAGCugAAUgaguugguguugGGCGCGCCGCc -3'
miRNA:   3'- aAUGCaGGUCG--UUGa-----------CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 9907 0.71 0.518973
Target:  5'- -cACGUUacucGCGACUGGCGCgcggGCCGCa -3'
miRNA:   3'- aaUGCAGgu--CGUUGACCGCG----CGGUGc -5'
6733 5' -57.2 NC_001875.2 + 10560 0.69 0.662415
Target:  5'- ---aGUgCAGCGGgUGcCGCGCCACGg -3'
miRNA:   3'- aaugCAgGUCGUUgACcGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 10630 0.73 0.406547
Target:  5'- --uCGUUCAGCAagcgccauucACUGaGCGCGCCGCc -3'
miRNA:   3'- aauGCAGGUCGU----------UGAC-CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 10841 0.7 0.549056
Target:  5'- -gGCGUCCAGCcguuGC-GGCaGCGCCuGCGc -3'
miRNA:   3'- aaUGCAGGUCGu---UGaCCG-CGCGG-UGC- -5'
6733 5' -57.2 NC_001875.2 + 12102 0.68 0.723642
Target:  5'- -cGCGccgCCGGUcGCgcgcacagucGGCGCGCCGCGc -3'
miRNA:   3'- aaUGCa--GGUCGuUGa---------CCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 12593 0.7 0.548044
Target:  5'- -gGCGUCCAccgcggcgcgcacGCAACggccugcuUGGCGCGCgGCa -3'
miRNA:   3'- aaUGCAGGU-------------CGUUG--------ACCGCGCGgUGc -5'
6733 5' -57.2 NC_001875.2 + 12847 0.69 0.641709
Target:  5'- ---aGUCgGGCAuCUGGCGCGCaaACGa -3'
miRNA:   3'- aaugCAGgUCGUuGACCGCGCGg-UGC- -5'
6733 5' -57.2 NC_001875.2 + 13715 0.69 0.618898
Target:  5'- -aACG-CCAcgcaagaguggcuGCAGCUGGCGCGCUugcaacaACGg -3'
miRNA:   3'- aaUGCaGGU-------------CGUUGACCGCGCGG-------UGC- -5'
6733 5' -57.2 NC_001875.2 + 17475 0.67 0.762968
Target:  5'- -gGCGcaaccgCCAGCAGCUcuuuaacaucGGCGgCGCuCACGa -3'
miRNA:   3'- aaUGCa-----GGUCGUUGA----------CCGC-GCG-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.