miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 31683 0.7 0.579661
Target:  5'- -aGCGUgCCGGCGuggaccgccGCUuGCGCGCCGCc -3'
miRNA:   3'- aaUGCA-GGUCGU---------UGAcCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 17481 0.72 0.479931
Target:  5'- gUUAUGgCCAGCAAgUUGGCGgaCGCCGCGu -3'
miRNA:   3'- -AAUGCaGGUCGUU-GACCGC--GCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 46487 0.71 0.509087
Target:  5'- -cAgGagCAGCAACUGGC-CGCCAUGa -3'
miRNA:   3'- aaUgCagGUCGUUGACCGcGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 102371 0.71 0.518973
Target:  5'- --uCGUCCAGCA--UGGCGCGCaACu -3'
miRNA:   3'- aauGCAGGUCGUugACCGCGCGgUGc -5'
6733 5' -57.2 NC_001875.2 + 9907 0.71 0.518973
Target:  5'- -cACGUUacucGCGACUGGCGCgcggGCCGCa -3'
miRNA:   3'- aaUGCAGgu--CGUUGACCGCG----CGGUGc -5'
6733 5' -57.2 NC_001875.2 + 128706 0.71 0.528933
Target:  5'- -cGCGUCCGcGCAGCgGGCuuCGCCGCc -3'
miRNA:   3'- aaUGCAGGU-CGUUGaCCGc-GCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 50844 0.71 0.542993
Target:  5'- -cGCGUCgcgcgccuuuuucagCAGCAGCUuuugcucgggcGGCGCGgCCACGa -3'
miRNA:   3'- aaUGCAG---------------GUCGUUGA-----------CCGCGC-GGUGC- -5'
6733 5' -57.2 NC_001875.2 + 66614 0.7 0.549056
Target:  5'- --uUGUCgGGCAGCgUGGCGCGCUugaGCa -3'
miRNA:   3'- aauGCAGgUCGUUG-ACCGCGCGG---UGc -5'
6733 5' -57.2 NC_001875.2 + 128766 0.7 0.569412
Target:  5'- -cACG-CCgugGGCGACcccGGCGCGCCGCu -3'
miRNA:   3'- aaUGCaGG---UCGUUGa--CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 30497 0.72 0.479931
Target:  5'- -gGCGUCCAGU--UUGGCGacaaagcaCGCCACGu -3'
miRNA:   3'- aaUGCAGGUCGuuGACCGC--------GCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 41839 0.72 0.470394
Target:  5'- -cGCGUCCAGU---UGcCGCGCCGCGg -3'
miRNA:   3'- aaUGCAGGUCGuugACcGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 99349 0.72 0.451615
Target:  5'- --gUGUCCGcGCAACUugGGCGCGCC-CGc -3'
miRNA:   3'- aauGCAGGU-CGUUGA--CCGCGCGGuGC- -5'
6733 5' -57.2 NC_001875.2 + 37888 0.75 0.310675
Target:  5'- -cGCG-CCAGCGgcuuGCUGGCGCGgCACu -3'
miRNA:   3'- aaUGCaGGUCGU----UGACCGCGCgGUGc -5'
6733 5' -57.2 NC_001875.2 + 33449 0.75 0.317233
Target:  5'- -cGCGUUCAGCGcggccgGCcaguggucgaaagUGGCGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGUCGU------UG-------------ACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 110811 0.74 0.340616
Target:  5'- -aACG-CCGcGCAgguggacgcGCUGGUGCGCCGCGg -3'
miRNA:   3'- aaUGCaGGU-CGU---------UGACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 31802 0.74 0.340616
Target:  5'- -cGCGUCCGGCAcgACgaacgcGGCaaGCGCCGCGu -3'
miRNA:   3'- aaUGCAGGUCGU--UGa-----CCG--CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 50138 0.74 0.340616
Target:  5'- -aGCGcucuUCCAGCGcCUGGCGCGCCu-- -3'
miRNA:   3'- aaUGC----AGGUCGUuGACCGCGCGGugc -5'
6733 5' -57.2 NC_001875.2 + 32776 0.74 0.364408
Target:  5'- -cGCGUCCucgcGCGGCgugGGCggGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGu---CGUUGa--CCG--CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 83188 0.73 0.418882
Target:  5'- -cACGUguggaaacucccacaCCAGCGACUGGCuGCGCagcaGCGg -3'
miRNA:   3'- aaUGCA---------------GGUCGUUGACCG-CGCGg---UGC- -5'
6733 5' -57.2 NC_001875.2 + 97867 0.73 0.433254
Target:  5'- -aACGUgCCGGuCGGCU-GCGCGCCGCa -3'
miRNA:   3'- aaUGCA-GGUC-GUUGAcCGCGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.