miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 7167 1.06 0.002753
Target:  5'- cUUACGUCCAGCAACUGGCGCGCCACGu -3'
miRNA:   3'- -AAUGCAGGUCGUUGACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 34519 0.7 0.579661
Target:  5'- gUACGg-CAGCAACUGcGUcucuuGCGCCGCGc -3'
miRNA:   3'- aAUGCagGUCGUUGAC-CG-----CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 88678 0.7 0.589948
Target:  5'- -gACG-CC-GCGGCgGGCGUGCCGCu -3'
miRNA:   3'- aaUGCaGGuCGUUGaCCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 96197 0.66 0.826848
Target:  5'- -cGCGcaaaCAGUuaAACUcGCGCGCCACGc -3'
miRNA:   3'- aaUGCag--GUCG--UUGAcCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 10630 0.73 0.406547
Target:  5'- --uCGUUCAGCAagcgccauucACUGaGCGCGCCGCc -3'
miRNA:   3'- aauGCAGGUCGU----------UGAC-CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 129760 0.73 0.415334
Target:  5'- -cACGUCCaguugcugccgcAGCAACUGGCuGuCGCUGCGg -3'
miRNA:   3'- aaUGCAGG------------UCGUUGACCG-C-GCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 74316 0.72 0.451615
Target:  5'- -cGCGUCCA--AGCUGGCggcggcggGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGUcgUUGACCG--------CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 47839 0.72 0.460954
Target:  5'- -cGCGUUgAGaAACgcgcGGCGCGCCGCGg -3'
miRNA:   3'- aaUGCAGgUCgUUGa---CCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 33637 0.71 0.528933
Target:  5'- -gGCGcaccCCAGCGcGC-GGCGCGCCACu -3'
miRNA:   3'- aaUGCa---GGUCGU-UGaCCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 50309 0.7 0.569412
Target:  5'- -gGCGgCCAuGCAGaaGGCGCGCCAgGc -3'
miRNA:   3'- aaUGCaGGU-CGUUgaCCGCGCGGUgC- -5'
6733 5' -57.2 NC_001875.2 + 12593 0.7 0.548044
Target:  5'- -gGCGUCCAccgcggcgcgcacGCAACggccugcuUGGCGCGCgGCa -3'
miRNA:   3'- aaUGCAGGU-------------CGUUG--------ACCGCGCGgUGc -5'
6733 5' -57.2 NC_001875.2 + 88403 0.71 0.518973
Target:  5'- gUACGg-CGGCAGCggcgGcGCGCGCCGCu -3'
miRNA:   3'- aAUGCagGUCGUUGa---C-CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 29706 0.78 0.216321
Target:  5'- -aGC-UCCcgAGCAAUUGGCGCGCCGCa -3'
miRNA:   3'- aaUGcAGG--UCGUUGACCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 10841 0.7 0.549056
Target:  5'- -gGCGUCCAGCcguuGC-GGCaGCGCCuGCGc -3'
miRNA:   3'- aaUGCAGGUCGu---UGaCCG-CGCGG-UGC- -5'
6733 5' -57.2 NC_001875.2 + 85976 0.75 0.325389
Target:  5'- --cCGcCCAcGCAGCUGGC-CGCCGCGg -3'
miRNA:   3'- aauGCaGGU-CGUUGACCGcGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 6656 0.71 0.499282
Target:  5'- -gGCGgCCAGCGugUuGGCGCGgCACu -3'
miRNA:   3'- aaUGCaGGUCGUugA-CCGCGCgGUGc -5'
6733 5' -57.2 NC_001875.2 + 59573 0.7 0.549056
Target:  5'- ----uUUCGGCAAC-GGCGCGCCugGc -3'
miRNA:   3'- aaugcAGGUCGUUGaCCGCGCGGugC- -5'
6733 5' -57.2 NC_001875.2 + 129343 0.7 0.589948
Target:  5'- -cACGUCUAcuuGCGGCgccGGCgGCGCCugGg -3'
miRNA:   3'- aaUGCAGGU---CGUUGa--CCG-CGCGGugC- -5'
6733 5' -57.2 NC_001875.2 + 131677 0.74 0.372591
Target:  5'- uUUGCGccgcuUCCAGCcGCUGcaccGCGCGCCGCa -3'
miRNA:   3'- -AAUGC-----AGGUCGuUGAC----CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 38041 0.73 0.415334
Target:  5'- -cGCG-CCAGCAagccGCUGGCGCGgcCCGCc -3'
miRNA:   3'- aaUGCaGGUCGU----UGACCGCGC--GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.