miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 7167 1.06 0.002753
Target:  5'- cUUACGUCCAGCAACUGGCGCGCCACGu -3'
miRNA:   3'- -AAUGCAGGUCGUUGACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 30440 0.81 0.140109
Target:  5'- -aGCGUCCAacgcGCAGCUGGCGCGCguugCGCGc -3'
miRNA:   3'- aaUGCAGGU----CGUUGACCGCGCG----GUGC- -5'
6733 5' -57.2 NC_001875.2 + 29706 0.78 0.216321
Target:  5'- -aGC-UCCcgAGCAAUUGGCGCGCCGCa -3'
miRNA:   3'- aaUGcAGG--UCGUUGACCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 37888 0.75 0.310675
Target:  5'- -cGCG-CCAGCGgcuuGCUGGCGCGgCACu -3'
miRNA:   3'- aaUGCaGGUCGU----UGACCGCGCgGUGc -5'
6733 5' -57.2 NC_001875.2 + 33449 0.75 0.317233
Target:  5'- -cGCGUUCAGCGcggccgGCcaguggucgaaagUGGCGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGUCGU------UG-------------ACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 85976 0.75 0.325389
Target:  5'- --cCGcCCAcGCAGCUGGC-CGCCGCGg -3'
miRNA:   3'- aauGCaGGU-CGUUGACCGcGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 50138 0.74 0.340616
Target:  5'- -aGCGcucuUCCAGCGcCUGGCGCGCCu-- -3'
miRNA:   3'- aaUGC----AGGUCGUuGACCGCGCGGugc -5'
6733 5' -57.2 NC_001875.2 + 110811 0.74 0.340616
Target:  5'- -aACG-CCGcGCAgguggacgcGCUGGUGCGCCGCGg -3'
miRNA:   3'- aaUGCaGGU-CGU---------UGACCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 31802 0.74 0.340616
Target:  5'- -cGCGUCCGGCAcgACgaacgcGGCaaGCGCCGCGu -3'
miRNA:   3'- aaUGCAGGUCGU--UGa-----CCG--CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 32776 0.74 0.364408
Target:  5'- -cGCGUCCucgcGCGGCgugGGCggGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGu---CGUUGa--CCG--CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 131677 0.74 0.372591
Target:  5'- uUUGCGccgcuUCCAGCcGCUGcaccGCGCGCCGCa -3'
miRNA:   3'- -AAUGC-----AGGUCGuUGAC----CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 10630 0.73 0.406547
Target:  5'- --uCGUUCAGCAagcgccauucACUGaGCGCGCCGCc -3'
miRNA:   3'- aauGCAGGUCGU----------UGAC-CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 129760 0.73 0.415334
Target:  5'- -cACGUCCaguugcugccgcAGCAACUGGCuGuCGCUGCGg -3'
miRNA:   3'- aaUGCAGG------------UCGUUGACCG-C-GCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 38041 0.73 0.415334
Target:  5'- -cGCG-CCAGCAagccGCUGGCGCGgcCCGCc -3'
miRNA:   3'- aaUGCaGGUCGU----UGACCGCGC--GGUGc -5'
6733 5' -57.2 NC_001875.2 + 83188 0.73 0.418882
Target:  5'- -cACGUguggaaacucccacaCCAGCGACUGGCuGCGCagcaGCGg -3'
miRNA:   3'- aaUGCA---------------GGUCGUUGACCG-CGCGg---UGC- -5'
6733 5' -57.2 NC_001875.2 + 97867 0.73 0.433254
Target:  5'- -aACGUgCCGGuCGGCU-GCGCGCCGCa -3'
miRNA:   3'- aaUGCA-GGUC-GUUGAcCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 99349 0.72 0.451615
Target:  5'- --gUGUCCGcGCAACUugGGCGCGCC-CGc -3'
miRNA:   3'- aauGCAGGU-CGUUGA--CCGCGCGGuGC- -5'
6733 5' -57.2 NC_001875.2 + 74316 0.72 0.451615
Target:  5'- -cGCGUCCA--AGCUGGCggcggcggGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGUcgUUGACCG--------CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 47839 0.72 0.460954
Target:  5'- -cGCGUUgAGaAACgcgcGGCGCGCCGCGg -3'
miRNA:   3'- aaUGCAGgUCgUUGa---CCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 41839 0.72 0.470394
Target:  5'- -cGCGUCCAGU---UGcCGCGCCGCGg -3'
miRNA:   3'- aaUGCAGGUCGuugACcGCGCGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.