Results 21 - 40 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6735 | 3' | -57.2 | NC_001875.2 | + | 13533 | 0.73 | 0.445974 |
Target: 5'- gGUGCCGUGCGUAGAaacggugcGCACCaGCUUc -3' miRNA: 3'- gCGCGGCGCGCGUUU--------UGUGGaCGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 113717 | 0.73 | 0.436913 |
Target: 5'- gCGCGCCGUGCGCGAccGCGCC-GUUg- -3' miRNA: 3'- -GCGCGGCGCGCGUUu-UGUGGaCGAgc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 129692 | 0.75 | 0.337114 |
Target: 5'- cCGUgGCCGCGCGCAGcuCGgCCaGCUCGg -3' miRNA: 3'- -GCG-CGGCGCGCGUUuuGU-GGaCGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 85402 | 0.78 | 0.237189 |
Target: 5'- cCGCGCCGaGCGCGGAAC-CCgcGCUCGu -3' miRNA: 3'- -GCGCGGCgCGCGUUUUGuGGa-CGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 89367 | 0.71 | 0.531763 |
Target: 5'- uGCGCgUGCGCGUGuuGCugCgugGCUCGc -3' miRNA: 3'- gCGCG-GCGCGCGUuuUGugGa--CGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 51021 | 0.72 | 0.473765 |
Target: 5'- cCGCGCCGCcCGagcaAAAGCugCUGCUg- -3' miRNA: 3'- -GCGCGGCGcGCg---UUUUGugGACGAgc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 107992 | 0.74 | 0.401766 |
Target: 5'- gCGCGUCGCaagGCGCAccGGGCGCggGCUCGg -3' miRNA: 3'- -GCGCGGCG---CGCGU--UUUGUGgaCGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 45596 | 0.79 | 0.199218 |
Target: 5'- aGCGCCGaguucgaCGCGCAAAACaACCUGCgCGg -3' miRNA: 3'- gCGCGGC-------GCGCGUUUUG-UGGACGaGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 12585 | 0.73 | 0.464403 |
Target: 5'- -cCGCgGCGCGCAcgcAACgGCCUGCUUGg -3' miRNA: 3'- gcGCGgCGCGCGUu--UUG-UGGACGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 21411 | 0.8 | 0.171799 |
Target: 5'- cCGCGCCGCGCGC---GCGCCUGgaCc -3' miRNA: 3'- -GCGCGGCGCGCGuuuUGUGGACgaGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 85441 | 0.73 | 0.419116 |
Target: 5'- cCGCGCCGCccGCGCAA---ACCgUGUUCGg -3' miRNA: 3'- -GCGCGGCG--CGCGUUuugUGG-ACGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 66177 | 0.73 | 0.455138 |
Target: 5'- gGCGCCaaGCGCuu-GCAgCUGCUCu -3' miRNA: 3'- gCGCGGcgCGCGuuuUGUgGACGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 19264 | 0.74 | 0.375793 |
Target: 5'- gCGCGUCGCGCGCAcAGCAacacggcCCUG-UCGg -3' miRNA: 3'- -GCGCGGCGCGCGUuUUGU-------GGACgAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 52702 | 0.75 | 0.352544 |
Target: 5'- gCGCGCgUGCGCGCAuacuGGCGCgUGCUUu -3' miRNA: 3'- -GCGCG-GCGCGCGUu---UUGUGgACGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 117771 | 0.76 | 0.307748 |
Target: 5'- gGgGCCGUGCGCAAAGCGCCuacgUGaCUUGu -3' miRNA: 3'- gCgCGGCGCGCGUUUUGUGG----AC-GAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 10597 | 0.77 | 0.267434 |
Target: 5'- cCGCGCCGCGU-CAAAGCugCUGCg-- -3' miRNA: 3'- -GCGCGGCGCGcGUUUUGugGACGagc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 69503 | 0.7 | 0.580938 |
Target: 5'- gGCGCCGCGCccacuuaaaacugGCGAAcgaACGCUUGCg-- -3' miRNA: 3'- gCGCGGCGCG-------------CGUUU---UGUGGACGagc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 9642 | 0.71 | 0.55168 |
Target: 5'- gCGCGCCGUGCGUGuuuCGCgaGCUUu -3' miRNA: 3'- -GCGCGGCGCGCGUuuuGUGgaCGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 36091 | 0.72 | 0.483221 |
Target: 5'- aCGCGCuCGCGCgGCAGcacgcggcggcGGCGCC-GCUCa -3' miRNA: 3'- -GCGCG-GCGCG-CGUU-----------UUGUGGaCGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 50512 | 0.72 | 0.480375 |
Target: 5'- gCGCGCCGCGCGgCAcgaugacgaggaggAGGCGCCgccgGCggCGc -3' miRNA: 3'- -GCGCGGCGCGC-GU--------------UUUGUGGa---CGa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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