miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 86316 0.77 0.42769
Target:  5'- aGgGCauuaGCAGCUUUGGCGCGUugGCUGCCg -3'
miRNA:   3'- gCgCG----UGUUGAGAUUGUGCG--CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 36374 0.77 0.436868
Target:  5'- aCGCGCACAcAC-C--GCACGUGCUGCUa -3'
miRNA:   3'- -GCGCGUGU-UGaGauUGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 30440 0.77 0.446157
Target:  5'- aGCGUcCAACgcgcagCUGGCGCGCGUUGCg -3'
miRNA:   3'- gCGCGuGUUGa-----GAUUGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 52695 0.77 0.446157
Target:  5'- uGCGCGCAuacuggcgcguGCUUUcgaugAGCGCgGCGCUGCCu -3'
miRNA:   3'- gCGCGUGU-----------UGAGA-----UUGUG-CGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 38423 0.77 0.454612
Target:  5'- aCGCGCGCugcgaggcGCUCUuuagcucguuguaGACGCGCGCUuccGCCu -3'
miRNA:   3'- -GCGCGUGu-------UGAGA-------------UUGUGCGCGA---CGG- -5'
6735 5' -53.5 NC_001875.2 + 42748 0.77 0.455556
Target:  5'- gGUGCcCAGCgccgagCUGACGCGCGCgugcGCCg -3'
miRNA:   3'- gCGCGuGUUGa-----GAUUGUGCGCGa---CGG- -5'
6735 5' -53.5 NC_001875.2 + 46015 0.76 0.465061
Target:  5'- gGUGCACGACgugCUGauuuugauucaACACGCGCgcGCCg -3'
miRNA:   3'- gCGCGUGUUGa--GAU-----------UGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 9923 0.76 0.484372
Target:  5'- gGCGCGCGggccgcaaguAUUCUAGCG-GUGCUGCCc -3'
miRNA:   3'- gCGCGUGU----------UGAGAUUGUgCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 54005 0.76 0.484372
Target:  5'- uCGCGCACGGC-CUuggcGGCGCGCGCguaCCg -3'
miRNA:   3'- -GCGCGUGUUGaGA----UUGUGCGCGac-GG- -5'
6735 5' -53.5 NC_001875.2 + 13868 0.76 0.493187
Target:  5'- gCGCGCGCAACaggccauUUUGGCGCuCGCUGCa -3'
miRNA:   3'- -GCGCGUGUUG-------AGAUUGUGcGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 49935 0.76 0.494171
Target:  5'- gCGCGCGCuAAUcagCUGgucgucggagcuGCGCGCGCUGCUg -3'
miRNA:   3'- -GCGCGUG-UUGa--GAU------------UGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 65200 0.76 0.50406
Target:  5'- aCGgaGCGCAGCUCcAGCAUGCGCUuGCa -3'
miRNA:   3'- -GCg-CGUGUUGAGaUUGUGCGCGA-CGg -5'
6735 5' -53.5 NC_001875.2 + 88603 0.75 0.513032
Target:  5'- aCGCGCACAAuCUUUucCAUGCGCUcguuaacGCCg -3'
miRNA:   3'- -GCGCGUGUU-GAGAuuGUGCGCGA-------CGG- -5'
6735 5' -53.5 NC_001875.2 + 71183 0.75 0.524085
Target:  5'- aGCGCGC-ACUUUggUACGCGCauugGCUg -3'
miRNA:   3'- gCGCGUGuUGAGAuuGUGCGCGa---CGG- -5'
6735 5' -53.5 NC_001875.2 + 96859 0.75 0.534212
Target:  5'- gCGCGCACAAUUUUGgaaaACgACGCGCUagacaacugGCCg -3'
miRNA:   3'- -GCGCGUGUUGAGAU----UG-UGCGCGA---------CGG- -5'
6735 5' -53.5 NC_001875.2 + 108244 0.75 0.544408
Target:  5'- aGCGCGuCAACgggCUGcuggccaaGCACGCGgUGCCc -3'
miRNA:   3'- gCGCGU-GUUGa--GAU--------UGUGCGCgACGG- -5'
6735 5' -53.5 NC_001875.2 + 7253 0.75 0.544408
Target:  5'- cCGCGCuGCAGCggcCUGGCGCGgGUcGCCg -3'
miRNA:   3'- -GCGCG-UGUUGa--GAUUGUGCgCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 81347 0.75 0.554665
Target:  5'- gGCGCGCugguGCcgCgcGCACGCGCcgGCCg -3'
miRNA:   3'- gCGCGUGu---UGa-GauUGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 55323 0.74 0.564979
Target:  5'- gGCGCGCGACggugaUGACGCGcCGCUucgggggcGCCg -3'
miRNA:   3'- gCGCGUGUUGag---AUUGUGC-GCGA--------CGG- -5'
6735 5' -53.5 NC_001875.2 + 94451 0.74 0.564979
Target:  5'- gGCGCACAACUCgguC-UGCugGCUGCCc -3'
miRNA:   3'- gCGCGUGUUGAGauuGuGCG--CGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.