miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 96139 0.7 0.899209
Target:  5'- aCGCgaUGCGGCCcaacccgcAGGUGGACCUCa- -3'
miRNA:   3'- cGUGaaAUGCCGG--------UCCGUUUGGAGcc -5'
6736 3' -51.8 NC_001875.2 + 94677 0.66 0.983047
Target:  5'- aGCGC---GCGGCaCGGGUgcugGAACC-CGGc -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCG----UUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 94636 0.68 0.944309
Target:  5'- uGCACcgcUGC-GCCAGGCuuuCCUCGa -3'
miRNA:   3'- -CGUGaa-AUGcCGGUCCGuuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 91187 0.68 0.953056
Target:  5'- gGCGCUUgcguguuguUGGUCGGGUccGCCUCGu -3'
miRNA:   3'- -CGUGAAau-------GCCGGUCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 89339 0.69 0.918026
Target:  5'- -aGCUUUGCGGCgCAcGCGGACgaCGGc -3'
miRNA:   3'- cgUGAAAUGCCG-GUcCGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 85295 0.7 0.885424
Target:  5'- uGCGCgg-GCGGCgCGGGCGcgggcauuGCCgCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCGUu-------UGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 82488 0.66 0.983047
Target:  5'- cGCGCUUUACGuuUAGgaacacaauguaGCGcuCCUCGGg -3'
miRNA:   3'- -CGUGAAAUGCcgGUC------------CGUuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 82157 0.68 0.944309
Target:  5'- cCGCUUUGCuGGCCgacGGGCGguacgugcgcAACCgccgCGGg -3'
miRNA:   3'- cGUGAAAUG-CCGG---UCCGU----------UUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 73992 0.66 0.976512
Target:  5'- uGCAaa--GCGGCCcGGCGGACCgguacgagagcaccgCGGc -3'
miRNA:   3'- -CGUgaaaUGCCGGuCCGUUUGGa--------------GCC- -5'
6736 3' -51.8 NC_001875.2 + 72619 0.73 0.745351
Target:  5'- gGUugUUUACGGCCugcGGCAcGCCaaaCGGc -3'
miRNA:   3'- -CGugAAAUGCCGGu--CCGUuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 70968 0.67 0.960461
Target:  5'- -aAUUggACGGCCGGGCcguccacGAGCCU-GGa -3'
miRNA:   3'- cgUGAaaUGCCGGUCCG-------UUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 69255 0.66 0.984947
Target:  5'- cGCGCUg---GGCCGcGGCucGAGCCguggCGGc -3'
miRNA:   3'- -CGUGAaaugCCGGU-CCG--UUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 68123 0.68 0.944309
Target:  5'- aGCGCguccagUUcCGGCgAGGCAAucacgcgcACCUCGu -3'
miRNA:   3'- -CGUGa-----AAuGCCGgUCCGUU--------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 66111 0.73 0.774864
Target:  5'- cGCGCggcggGCGGCgAGGCGGcgccGCCcgCGGa -3'
miRNA:   3'- -CGUGaaa--UGCCGgUCCGUU----UGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 65768 0.67 0.97074
Target:  5'- aGC-Cg--GCGGCUGGGCGAGCaCgcgcgCGGc -3'
miRNA:   3'- -CGuGaaaUGCCGGUCCGUUUG-Ga----GCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 65096 0.72 0.829953
Target:  5'- cGCGCUcaacgagGCGGCCAaGCAgcucAGCCUCGc -3'
miRNA:   3'- -CGUGAaa-----UGCCGGUcCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 64244 0.75 0.662737
Target:  5'- -aGCUUUAUGGCUGGGCAggUCguuugCGGc -3'
miRNA:   3'- cgUGAAAUGCCGGUCCGUuuGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 63130 0.67 0.967661
Target:  5'- ------aGCGGCCGGGCGcgcGGCCggcgcaCGGg -3'
miRNA:   3'- cgugaaaUGCCGGUCCGU---UUGGa-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.