Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6736 | 5' | -55.8 | NC_001875.2 | + | 119679 | 1.09 | 0.002254 |
Target: 5'- gCACAGCGGCUUCAGCCGAAAGCGCUGg -3' miRNA: 3'- -GUGUCGCCGAAGUCGGCUUUCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 111793 | 0.77 | 0.302239 |
Target: 5'- gACGGCGGUgcacgCGGCCGAcGGCGcCUGg -3' miRNA: 3'- gUGUCGCCGaa---GUCGGCUuUCGC-GAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 35365 | 0.75 | 0.371915 |
Target: 5'- aCACGGgcaGGUggagCAGCUGGAGGCGCUGc -3' miRNA: 3'- -GUGUCg--CCGaa--GUCGGCUUUCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 71134 | 0.75 | 0.397449 |
Target: 5'- gCugGGCGGCcUCAGCgCGGccGCGUUGg -3' miRNA: 3'- -GugUCGCCGaAGUCG-GCUuuCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 42331 | 0.74 | 0.451755 |
Target: 5'- -cCAGCGGCccCAGgCGGAAGCGCa- -3' miRNA: 3'- guGUCGCCGaaGUCgGCUUUCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 73705 | 0.74 | 0.433195 |
Target: 5'- uGCGGCGGCUgCGGCUGuuGGgGUUGg -3' miRNA: 3'- gUGUCGCCGAaGUCGGCuuUCgCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 23173 | 0.73 | 0.461197 |
Target: 5'- gCACGGCGGCUgcgggcaCGGCCGuuGGCgGUUGc -3' miRNA: 3'- -GUGUCGCCGAa------GUCGGCuuUCG-CGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 124790 | 0.73 | 0.470742 |
Target: 5'- cCGCAGCGGaaccaGGCCGAcAAGCGCg- -3' miRNA: 3'- -GUGUCGCCgaag-UCGGCU-UUCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 63451 | 0.73 | 0.461197 |
Target: 5'- -uCGGCGGC--CAGCCGcGAGGCGUUGg -3' miRNA: 3'- guGUCGCCGaaGUCGGC-UUUCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 16897 | 0.72 | 0.550303 |
Target: 5'- gCGCAGCGGCgccgcgaugUC-GCUGAuuGUGCUGa -3' miRNA: 3'- -GUGUCGCCGa--------AGuCGGCUuuCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 131523 | 0.72 | 0.540092 |
Target: 5'- uGCAGCGGCUggaagCGGCgcAAAGCGCg- -3' miRNA: 3'- gUGUCGCCGAa----GUCGgcUUUCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 73651 | 0.71 | 0.602097 |
Target: 5'- uGCGGCGGCUgcggCGGCUGc-GGCuGCUGc -3' miRNA: 3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 7459 | 0.71 | 0.570892 |
Target: 5'- uGCGGCGGUguaCGGCCGAuucuGCGCc- -3' miRNA: 3'- gUGUCGCCGaa-GUCGGCUuu--CGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 73621 | 0.71 | 0.581258 |
Target: 5'- gGCGGCGGCUgcggCGGCUGc-GGCgGCUGc -3' miRNA: 3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 39275 | 0.7 | 0.62303 |
Target: 5'- gCGgGGCGGCUUCugcccGCCGAcaccAAGUGCg- -3' miRNA: 3'- -GUgUCGCCGAAGu----CGGCU----UUCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 42762 | 0.7 | 0.643991 |
Target: 5'- aGCGGCGcGCUcgggUCGGCCGu--GCGCa- -3' miRNA: 3'- gUGUCGC-CGA----AGUCGGCuuuCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 54573 | 0.7 | 0.643991 |
Target: 5'- cCGCGGCGGCcgcUUCGcCCGgcGGCGCg- -3' miRNA: 3'- -GUGUCGCCG---AAGUcGGCuuUCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 103260 | 0.7 | 0.675337 |
Target: 5'- gGCGGUGGCUUCGgaguucacGCUGAcuAGCGCa- -3' miRNA: 3'- gUGUCGCCGAAGU--------CGGCUu-UCGCGac -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 10868 | 0.7 | 0.675337 |
Target: 5'- aCGCGGUGGCcgC-GUCGguGGCGCUGc -3' miRNA: 3'- -GUGUCGCCGaaGuCGGCuuUCGCGAC- -5' |
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6736 | 5' | -55.8 | NC_001875.2 | + | 126801 | 0.7 | 0.66178 |
Target: 5'- uGCGGCGGCUUUgcagccaauaauggAGaCCGAGgcGGCGCa- -3' miRNA: 3'- gUGUCGCCGAAG--------------UC-GGCUU--UCGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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