miRNA display CGI


Results 1 - 20 of 502 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 131751 0.67 0.821805
Target:  5'- --uGG-GCCGGCGGCGgAucGGGCgGCGCg -3'
miRNA:   3'- uauCCgCGGUUGCUGCgU--UUCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 131604 0.68 0.812958
Target:  5'- ---cGCGCUgaaaAACGuGCGCAAuuugauGGCGCGCg -3'
miRNA:   3'- uaucCGCGG----UUGC-UGCGUU------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 131517 0.67 0.82005
Target:  5'- -cGGGgGCCGGCauccguuugaGCGGAGCGCGg -3'
miRNA:   3'- uaUCCgCGGUUGcug-------CGUUUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 131513 0.83 0.143443
Target:  5'- --cGGCGCgCGgugcagcggcuggaaGCGGCGCAAAGCGCGCc -3'
miRNA:   3'- uauCCGCG-GU---------------UGCUGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 131357 0.68 0.79383
Target:  5'- -cAGGCGCaCAACGugGCuuGGaacucuuCGUGUg -3'
miRNA:   3'- uaUCCGCG-GUUGCugCGuuUC-------GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 131189 0.67 0.829613
Target:  5'- ---cGUGCCcggaccuguuugaGACGcugcaaACGCAGGGCGCGCu -3'
miRNA:   3'- uaucCGCGG-------------UUGC------UGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 130786 0.67 0.847228
Target:  5'- --cGGuCGCCAACGuugcgcccaACGCu--GUGCGCc -3'
miRNA:   3'- uauCC-GCGGUUGC---------UGCGuuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 130648 0.79 0.255323
Target:  5'- -cAGGCGCaugcgguuCAGCGugGCAAAGUGcCGCg -3'
miRNA:   3'- uaUCCGCG--------GUUGCugCGUUUCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 130576 0.67 0.821805
Target:  5'- -aGGGuCGCCGAUGACGCAccGCuaaaGUa -3'
miRNA:   3'- uaUCC-GCGGUUGCUGCGUuuCGcg--CG- -5'
6744 5' -55.3 NC_001875.2 + 130451 0.75 0.388814
Target:  5'- -aGGGCGCCGcUGACGCAccGCuaGCa -3'
miRNA:   3'- uaUCCGCGGUuGCUGCGUuuCGcgCG- -5'
6744 5' -55.3 NC_001875.2 + 130111 0.75 0.397449
Target:  5'- --cGGCGgCGGCGGCGCGAccGGUGuCGCg -3'
miRNA:   3'- uauCCGCgGUUGCUGCGUU--UCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 129528 0.67 0.862389
Target:  5'- -cAGGCcgagcugGCCGagcuGCG-CGCGGccacGGCGCGCg -3'
miRNA:   3'- uaUCCG-------CGGU----UGCuGCGUU----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 129183 0.69 0.726709
Target:  5'- -cAGGCGCCGccgGCGcCGCAAguAGaCGUGUc -3'
miRNA:   3'- uaUCCGCGGU---UGCuGCGUU--UC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 128771 0.73 0.490127
Target:  5'- cGUGGGCGaCCc-CGGCGCGccgcuGCGCGCc -3'
miRNA:   3'- -UAUCCGC-GGuuGCUGCGUuu---CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 128305 0.68 0.794757
Target:  5'- --cGGCGCCggUGACGUgcgccAAA-UGCGCa -3'
miRNA:   3'- uauCCGCGGuuGCUGCG-----UUUcGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 128060 0.73 0.540092
Target:  5'- -cGGGC-CCAACugGACGaCAuuGCGCGCg -3'
miRNA:   3'- uaUCCGcGGUUG--CUGC-GUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127916 0.66 0.892375
Target:  5'- -aAGcGgGCCGACGACaagGCAAGGaaaaagaaaUGCGCg -3'
miRNA:   3'- uaUC-CgCGGUUGCUG---CGUUUC---------GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127329 0.66 0.897101
Target:  5'- -cGGuGCGCCGcuuuccgcagcggaGCaGACGCAAcGUGUGCc -3'
miRNA:   3'- uaUC-CGCGGU--------------UG-CUGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127053 0.66 0.892375
Target:  5'- -aGGGCGCCGGCuguaauaGuCAAAGC-CGCg -3'
miRNA:   3'- uaUCCGCGGUUGcug----C-GUUUCGcGCG- -5'
6744 5' -55.3 NC_001875.2 + 126811 0.71 0.633511
Target:  5'- -aAGGCGCaGACuGAaucUGaCAAAGCGCGCg -3'
miRNA:   3'- uaUCCGCGgUUG-CU---GC-GUUUCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.