miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 114970 0.86 0.15355
Target:  5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3'
miRNA:   3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 114504 0.69 0.876933
Target:  5'- ---uGACGcgGUCGCgcGGCGGCGCaacCGCc -3'
miRNA:   3'- auuuUUGCa-CAGCGa-CUGCCGCG---GCG- -5'
6745 3' -52.7 NC_001875.2 + 114234 0.7 0.837064
Target:  5'- -----uCGUcGUCGCUgGACGcGgGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGA-CUGC-CgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 113631 0.72 0.763417
Target:  5'- cAAGAGCG----GC-GACGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacagCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 113357 0.74 0.650237
Target:  5'- ----cGCGgcugcGUCGCUG-CGGCGCgGCg -3'
miRNA:   3'- auuuuUGCa----CAGCGACuGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 112697 1.09 0.004699
Target:  5'- cUAAAAACGUGUCGCUGACGGCGCCGCc -3'
miRNA:   3'- -AUUUUUGCACAGCGACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 111964 0.67 0.938776
Target:  5'- ----cGCGUuUCGCaaACGGCGcCCGCg -3'
miRNA:   3'- auuuuUGCAcAGCGacUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 111781 0.73 0.67133
Target:  5'- ------gGUGUCGCuggUGACGGCGgUGCa -3'
miRNA:   3'- auuuuugCACAGCG---ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 110888 0.68 0.922873
Target:  5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3'
miRNA:   3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110687 0.79 0.383194
Target:  5'- aAGAAGCG-GcCGCgGAgGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaCaGCGaCUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110646 0.7 0.837064
Target:  5'- ------gGUGgCGCUGGCcGUGCCGCg -3'
miRNA:   3'- auuuuugCACaGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110159 0.72 0.763417
Target:  5'- -----cCGcGUCGCgcucgucgGGCGGCGUCGCa -3'
miRNA:   3'- auuuuuGCaCAGCGa-------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 109873 0.67 0.938776
Target:  5'- --cAAGC-UGgCGCUGGCGccgcccauccccGCGCCGCa -3'
miRNA:   3'- auuUUUGcACaGCGACUGC------------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 109015 0.74 0.639663
Target:  5'- -----uCGUGcCGCcGACGGUGCCGUc -3'
miRNA:   3'- auuuuuGCACaGCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 108878 0.69 0.869401
Target:  5'- gGAAAGCGcGgCGgaGGCguacauGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCaCaGCgaCUG------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 106099 0.68 0.928429
Target:  5'- cGAAGACGUGUUGCgUGuGCuuCGCUGCa -3'
miRNA:   3'- aUUUUUGCACAGCG-AC-UGccGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 104750 0.66 0.973177
Target:  5'- --cGGGCGUGg-GCgu-CGGCGCCGa -3'
miRNA:   3'- auuUUUGCACagCGacuGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 103439 0.66 0.963823
Target:  5'- -----cUGUGuUUGCUGgucuGCGGCGUCGUg -3'
miRNA:   3'- auuuuuGCAC-AGCGAC----UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 103115 0.66 0.963823
Target:  5'- -----uCGUGgcUCGCuUGGCGGCgGCgGCg -3'
miRNA:   3'- auuuuuGCAC--AGCG-ACUGCCG-CGgCG- -5'
6745 3' -52.7 NC_001875.2 + 102495 0.74 0.639663
Target:  5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.