miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 31522 0.71 0.800625
Target:  5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3'
miRNA:   3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 63952 0.72 0.763417
Target:  5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3'
miRNA:   3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 131610 0.73 0.67133
Target:  5'- gAAAAACGUG-CGCaauuUGAUGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCACaGCG----ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 125621 0.75 0.576383
Target:  5'- --uGGGCGUGUCGCcGACGGaCGCaauuGCg -3'
miRNA:   3'- auuUUUGCACAGCGaCUGCC-GCGg---CG- -5'
6745 3' -52.7 NC_001875.2 + 767 0.69 0.876933
Target:  5'- ---cAugGggcaGCUGACGGCGgCGCg -3'
miRNA:   3'- auuuUugCacagCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 60109 0.72 0.753548
Target:  5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3'
miRNA:   3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 12654 0.78 0.400591
Target:  5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3'
miRNA:   3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18752 0.7 0.837064
Target:  5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3'
miRNA:   3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 114970 0.86 0.15355
Target:  5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3'
miRNA:   3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 89375 0.72 0.753548
Target:  5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3'
miRNA:   3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 125043 0.71 0.801549
Target:  5'- aUAGAGACaUGUUGCUGuuGGCGaaGCu -3'
miRNA:   3'- -AUUUUUGcACAGCGACugCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 36087 0.72 0.734489
Target:  5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3'
miRNA:   3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86911 0.73 0.68183
Target:  5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 109015 0.74 0.639663
Target:  5'- -----uCGUGcCGCcGACGGUGCCGUc -3'
miRNA:   3'- auuuuuGCACaGCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41126 0.74 0.618504
Target:  5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3'
miRNA:   3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 34161 0.69 0.884231
Target:  5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3'
miRNA:   3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 6806 0.69 0.876933
Target:  5'- -cAGAuCGgGUCGCUGAaccagcuGCGCCGCg -3'
miRNA:   3'- auUUUuGCaCAGCGACUgc-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 16890 0.69 0.869401
Target:  5'- ----uGCGUa-CGCgcaGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCAcaGCGac-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.