miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 3' -50.6 NC_001875.2 + 15838 0.66 0.990254
Target:  5'- cGAGACUGCaACCGCGAGaCCa---- -3'
miRNA:   3'- cUUUUGAUGcUGGCGCUCcGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 914 0.66 0.990254
Target:  5'- cGAAccGGCUuaACGACUGCaGGGCCGc--- -3'
miRNA:   3'- -CUU--UUGA--UGCUGGCGcUCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 100985 0.66 0.99012
Target:  5'- ---cGCUGCaGGCCGCGGcguuugcGGCgGUUUUg -3'
miRNA:   3'- cuuuUGAUG-CUGGCGCU-------CCGgCAAAA- -5'
6749 3' -50.6 NC_001875.2 + 90834 0.66 0.988854
Target:  5'- -uGAGC-ACGACCaCGcGGCCGUUg- -3'
miRNA:   3'- cuUUUGaUGCUGGcGCuCCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 39161 0.66 0.988854
Target:  5'- ----uUUGgGGCCGCGAGGCgGg--- -3'
miRNA:   3'- cuuuuGAUgCUGGCGCUCCGgCaaaa -5'
6749 3' -50.6 NC_001875.2 + 60704 0.66 0.987303
Target:  5'- --cAAC-GCGGCCGCgcuGAGGCCGc--- -3'
miRNA:   3'- cuuUUGaUGCUGGCG---CUCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 74755 0.66 0.985591
Target:  5'- --uGugUACcACaGCGAGGCCGUUg- -3'
miRNA:   3'- cuuUugAUGcUGgCGCUCCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 126935 0.66 0.985591
Target:  5'- --cGACUACGACCGgGAGcaGCUGc--- -3'
miRNA:   3'- cuuUUGAUGCUGGCgCUC--CGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 39261 0.66 0.985591
Target:  5'- aGAAACUGCGcgaCGCGGGGCgGc--- -3'
miRNA:   3'- cUUUUGAUGCug-GCGCUCCGgCaaaa -5'
6749 3' -50.6 NC_001875.2 + 96937 0.66 0.983707
Target:  5'- ------gGCGACCGCGGcGGCCa---- -3'
miRNA:   3'- cuuuugaUGCUGGCGCU-CCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 36410 0.66 0.983707
Target:  5'- gGAcGACacggGCG-CCGCGAGGCCu---- -3'
miRNA:   3'- -CUuUUGa---UGCuGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 88750 0.67 0.981643
Target:  5'- cAAAACUGCGGCgaguuCGAGGUCGUg-- -3'
miRNA:   3'- cUUUUGAUGCUGgc---GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 86377 0.67 0.981643
Target:  5'- -uAGACgcGCGGCUGCGGGcGCCGa--- -3'
miRNA:   3'- cuUUUGa-UGCUGGCGCUC-CGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 124959 0.67 0.981643
Target:  5'- gGAAAGCUcuguuUGACCGCGucGCCGc--- -3'
miRNA:   3'- -CUUUUGAu----GCUGGCGCucCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 19416 0.67 0.981643
Target:  5'- uGAuuACUgcuuGCGACUGCGgcgaAGGCCGg--- -3'
miRNA:   3'- -CUuuUGA----UGCUGGCGC----UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 55715 0.67 0.979389
Target:  5'- ----uCUACGGCCGCGcaaauacGGCCGa--- -3'
miRNA:   3'- cuuuuGAUGCUGGCGCu------CCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 39027 0.67 0.979389
Target:  5'- -----aUGCGACCGCGGcgcGGCaCGUUa- -3'
miRNA:   3'- cuuuugAUGCUGGCGCU---CCG-GCAAaa -5'
6749 3' -50.6 NC_001875.2 + 90611 0.67 0.974273
Target:  5'- ------cGCGACgGcCGAGGCCGUg-- -3'
miRNA:   3'- cuuuugaUGCUGgC-GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 100801 0.67 0.971395
Target:  5'- --cGACgUACGGCCGCGccGGGUCGg--- -3'
miRNA:   3'- cuuUUG-AUGCUGGCGC--UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 68771 0.68 0.968292
Target:  5'- cGAggUUGCGgaACCGCGcAGGUCGUUc- -3'
miRNA:   3'- cUUuuGAUGC--UGGCGC-UCCGGCAAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.