Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6755 | 3' | -59.5 | NC_001875.2 | + | 95258 | 0.68 | 0.530525 |
Target: 5'- -cGGCuGCGCCGCAuuuugcaacAGccGcGCGUGGACa -3' miRNA: 3'- aaCCG-CGCGGCGU---------UCuuC-CGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 1497 | 0.69 | 0.491268 |
Target: 5'- -cGGUGCGUCaGCGAcGAcccugccuuuuGGGUGCGGGCg -3' miRNA: 3'- aaCCGCGCGG-CGUU-CU-----------UCCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 59219 | 0.71 | 0.380299 |
Target: 5'- uUUGGCGUGCCGCAGGccguaaacaaccugGAGGCcCAaGCg -3' miRNA: 3'- -AACCGCGCGGCGUUC--------------UUCCGcGUcUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 32492 | 0.76 | 0.187708 |
Target: 5'- -gGGCGCGCC-CAAGuu-GCGCGGACa -3' miRNA: 3'- aaCCGCGCGGcGUUCuucCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 92455 | 0.67 | 0.580055 |
Target: 5'- -cGGUGCacaggcacgagugGCCGCAGGGuAGGCacgagacgGCGGGCg -3' miRNA: 3'- aaCCGCG-------------CGGCGUUCU-UCCG--------CGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 41603 | 0.68 | 0.550583 |
Target: 5'- -aGGCGCgGgCGC----GGGCGCGGGCa -3' miRNA: 3'- aaCCGCG-CgGCGuucuUCCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 124781 | 0.69 | 0.481663 |
Target: 5'- gUGGCGuCGCCGCAgcGGAaccaggccgacaAGcGCGCGGcCa -3' miRNA: 3'- aACCGC-GCGGCGU--UCU------------UC-CGCGUCuG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 120067 | 0.78 | 0.127554 |
Target: 5'- -aGGCGCGCCGCGAGGuuGGCGauGACg -3' miRNA: 3'- aaCCGCGCGGCGUUCUu-CCGCguCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 3048 | 0.68 | 0.550583 |
Target: 5'- -gGGCaGCG-CGUAAGAGGcGCGCAGcgGCg -3' miRNA: 3'- aaCCG-CGCgGCGUUCUUC-CGCGUC--UG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 24001 | 0.81 | 0.087998 |
Target: 5'- -cGcGCGCGUCGCAAGGcgcaccGGGCGCGGGCu -3' miRNA: 3'- aaC-CGCGCGGCGUUCU------UCCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 67247 | 0.69 | 0.491268 |
Target: 5'- -cGGCGUGCCGUugcAGAAGGUGgCGcGCu -3' miRNA: 3'- aaCCGCGCGGCGu--UCUUCCGC-GUcUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 94320 | 0.68 | 0.540523 |
Target: 5'- -gGGCGCGUC-CAGGcAGGGCGCGu-- -3' miRNA: 3'- aaCCGCGCGGcGUUC-UUCCGCGUcug -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 64298 | 0.69 | 0.472148 |
Target: 5'- --cGCGUGCUGCAAGgcGGagcucCGCAGAUa -3' miRNA: 3'- aacCGCGCGGCGUUCuuCC-----GCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 81067 | 0.71 | 0.388683 |
Target: 5'- aUGGUGCGCCGCGacgAGAAGaGcCGCguguucauagucaaAGACg -3' miRNA: 3'- aACCGCGCGGCGU---UCUUC-C-GCG--------------UCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 88886 | 0.73 | 0.305429 |
Target: 5'- gUUGGCGCGCUGCGc--GGGCuGCuGACg -3' miRNA: 3'- -AACCGCGCGGCGUucuUCCG-CGuCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 77261 | 0.74 | 0.265699 |
Target: 5'- -gGGCGCGCCGCcGGGcgaagcggccgccgcGGCGCAGuACa -3' miRNA: 3'- aaCCGCGCGGCGuUCUu--------------CCGCGUC-UG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 34998 | 0.67 | 0.616033 |
Target: 5'- gUGcGCGCGCCGuCAAacAAGGCGCGcauaacguccagcuuGACg -3' miRNA: 3'- aAC-CGCGCGGC-GUUc-UUCCGCGU---------------CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 126523 | 0.67 | 0.591327 |
Target: 5'- -cGGCGagcagguaGCgCGCAauGGAguggucgucGGGCGCGGGCa -3' miRNA: 3'- aaCCGCg-------CG-GCGU--UCU---------UCCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 50511 | 0.68 | 0.567812 |
Target: 5'- --aGCGCGCCGCGcggcacgaugacgaGGAggAGGCGCcgccGGCg -3' miRNA: 3'- aacCGCGCGGCGU--------------UCU--UCCGCGu---CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 89928 | 0.68 | 0.550583 |
Target: 5'- -cGGCGCGuCCGCGGGccacuauuCGCGGGCa -3' miRNA: 3'- aaCCGCGC-GGCGUUCuucc----GCGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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