miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 64714 0.66 0.95773
Target:  5'- aGCAAcacGGCGCuggcCAAGGCGGGCgaCGUg -3'
miRNA:   3'- aCGUU---UUGCGc---GUUUUGCCCGg-GCAa -5'
6757 3' -52.9 NC_001875.2 + 59058 0.66 0.95773
Target:  5'- uUGCAAAACGCGUcggcAAACGGuuuGgCCGg- -3'
miRNA:   3'- -ACGUUUUGCGCGu---UUUGCC---CgGGCaa -5'
6757 3' -52.9 NC_001875.2 + 70045 0.66 0.95773
Target:  5'- gUGCGGu-CGCuGCGAcgGACGGGCCUc-- -3'
miRNA:   3'- -ACGUUuuGCG-CGUU--UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 89315 0.66 0.95773
Target:  5'- aUGUcGAGCG-GCAcGACGGGCCUc-- -3'
miRNA:   3'- -ACGuUUUGCgCGUuUUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 18160 0.66 0.953712
Target:  5'- gUGCGGcGCGCGCGAcgccgccacuguGGCGGuGCCgGc- -3'
miRNA:   3'- -ACGUUuUGCGCGUU------------UUGCC-CGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 59751 0.66 0.953712
Target:  5'- aGCAcuuUGCGCGAAaccACGGcGCCCa-- -3'
miRNA:   3'- aCGUuuuGCGCGUUU---UGCC-CGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 63724 0.66 0.953712
Target:  5'- cGCcggaacuGGACGCGCugcacAACGGGCCUu-- -3'
miRNA:   3'- aCGu------UUUGCGCGuu---UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 82176 0.66 0.953712
Target:  5'- gUGCAAccagguCGUGCucGAUGGGCgCCGg- -3'
miRNA:   3'- -ACGUUuu----GCGCGuuUUGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 108850 0.66 0.953712
Target:  5'- -cCAAAACGCGCAGAucuugGCGGcGCUgGa- -3'
miRNA:   3'- acGUUUUGCGCGUUU-----UGCC-CGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 21680 0.66 0.953712
Target:  5'- gGCcAAGCGCGCAcucaAAACGuuGGCCaaCGUUg -3'
miRNA:   3'- aCGuUUUGCGCGU----UUUGC--CCGG--GCAA- -5'
6757 3' -52.9 NC_001875.2 + 90013 0.66 0.949444
Target:  5'- gGCAAcugGACGCGCA--ACuGGCCgCGg- -3'
miRNA:   3'- aCGUU---UUGCGCGUuuUGcCCGG-GCaa -5'
6757 3' -52.9 NC_001875.2 + 30030 0.66 0.949444
Target:  5'- aGCAAAACG-GCuuGGGCGGGCUguuugCGUg -3'
miRNA:   3'- aCGUUUUGCgCGu-UUUGCCCGG-----GCAa -5'
6757 3' -52.9 NC_001875.2 + 39979 0.66 0.949444
Target:  5'- aGCAG---GCGCccuGgGGGCCCGUg -3'
miRNA:   3'- aCGUUuugCGCGuuuUgCCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 74927 0.66 0.949444
Target:  5'- aUGCGAuaAACGUGCucaaguGCcGGCCCGa- -3'
miRNA:   3'- -ACGUU--UUGCGCGuuu---UGcCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 128167 0.66 0.949444
Target:  5'- cUGCAAAaaaacACGCuuuuGCAc-GCGGGCCCa-- -3'
miRNA:   3'- -ACGUUU-----UGCG----CGUuuUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 69622 0.66 0.946762
Target:  5'- gUGCuguuGGCGCGCGAggUGGacgccgucggccucaGCCCGc- -3'
miRNA:   3'- -ACGuu--UUGCGCGUUuuGCC---------------CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 60405 0.66 0.944922
Target:  5'- uUGCGAGcUGCGCAAAACcGGUuuGa- -3'
miRNA:   3'- -ACGUUUuGCGCGUUUUGcCCGggCaa -5'
6757 3' -52.9 NC_001875.2 + 97879 0.66 0.944922
Target:  5'- gGCu--GCGCGCcgcACGGGCaCGUUg -3'
miRNA:   3'- aCGuuuUGCGCGuuuUGCCCGgGCAA- -5'
6757 3' -52.9 NC_001875.2 + 18425 0.66 0.944922
Target:  5'- uUGCGuacucgGCGCGAGGCGcGGUCCGc- -3'
miRNA:   3'- -ACGUuuug--CGCGUUUUGC-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 99629 0.66 0.944922
Target:  5'- cUGCAAGugGCGCAaguuGAAgGGGCa---- -3'
miRNA:   3'- -ACGUUUugCGCGU----UUUgCCCGggcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.