miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 5' -53.6 NC_001875.2 + 108239 0.66 0.966775
Target:  5'- uUCuGGCGGCCGGcUGGGCUgCGGCa- -3'
miRNA:   3'- gAGcUUGUCGGCUaGCUUGA-GCCGcu -5'
6760 5' -53.6 NC_001875.2 + 4479 0.66 0.966775
Target:  5'- gUCG-ACAGCCucaaaGuACUCGGCGGg -3'
miRNA:   3'- gAGCuUGUCGGcuag-CuUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 72899 0.66 0.96347
Target:  5'- gUCGAACAagcuGCUGAUCcAACUC-GCGGc -3'
miRNA:   3'- gAGCUUGU----CGGCUAGcUUGAGcCGCU- -5'
6760 5' -53.6 NC_001875.2 + 57303 0.66 0.959942
Target:  5'- -gCGAACGGgCGcgCGucgUCGGCGAc -3'
miRNA:   3'- gaGCUUGUCgGCuaGCuugAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 86889 0.66 0.959942
Target:  5'- aUCGGGCugcGCC--UCGAACUUGGCc- -3'
miRNA:   3'- gAGCUUGu--CGGcuAGCUUGAGCCGcu -5'
6760 5' -53.6 NC_001875.2 + 89317 0.66 0.959942
Target:  5'- gUCGAGCGGCaCGA-CGGGCcucagcuuugCGGCGc -3'
miRNA:   3'- gAGCUUGUCG-GCUaGCUUGa---------GCCGCu -5'
6760 5' -53.6 NC_001875.2 + 54048 0.66 0.959942
Target:  5'- uCUCGGu--GCCGAacaCGAGgUCGGCGc -3'
miRNA:   3'- -GAGCUuguCGGCUa--GCUUgAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 3162 0.66 0.956186
Target:  5'- gUCGGGCGG-CGAguaggUGAGC-CGGCGGc -3'
miRNA:   3'- gAGCUUGUCgGCUa----GCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 7084 0.66 0.955015
Target:  5'- -aCGGGCGGCagcuacuacgugcgCGGcUCGGACggCGGCGAa -3'
miRNA:   3'- gaGCUUGUCG--------------GCU-AGCUUGa-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 24008 0.66 0.952198
Target:  5'- gUCGcaaggcGCA-CCGGgcgCGGGCUCGGCGGu -3'
miRNA:   3'- gAGCu-----UGUcGGCUa--GCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 55010 0.66 0.947973
Target:  5'- -aUGAAUaaGGCCuguuccuguUUGAGCUCGGCGAa -3'
miRNA:   3'- gaGCUUG--UCGGcu-------AGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 19598 0.66 0.947973
Target:  5'- cCUCGAcCAGCUGGUC-AACUUGGg-- -3'
miRNA:   3'- -GAGCUuGUCGGCUAGcUUGAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 26797 0.66 0.946659
Target:  5'- -aCGAGCGGCUuAUCGGcaaccucaugaacaACUCGGUGu -3'
miRNA:   3'- gaGCUUGUCGGcUAGCU--------------UGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 102901 0.67 0.943508
Target:  5'- aUUGAGCGGCCGGccguugaagCGGAggUGGCGGa -3'
miRNA:   3'- gAGCUUGUCGGCUa--------GCUUgaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 10658 0.67 0.943508
Target:  5'- aCUUGGGCGGCgGAcUGcACUUGGCGc -3'
miRNA:   3'- -GAGCUUGUCGgCUaGCuUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 113836 0.67 0.933848
Target:  5'- --gGAACAGCgGGUCGGGgUCGGg-- -3'
miRNA:   3'- gagCUUGUCGgCUAGCUUgAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 107938 0.67 0.933848
Target:  5'- -gCGGGCuGCaCGGUuuucacgugcaCGAAUUCGGCGAc -3'
miRNA:   3'- gaGCUUGuCG-GCUA-----------GCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 943 0.67 0.933848
Target:  5'- -cCGGACGGCUG-UUGAACUCGcUGAg -3'
miRNA:   3'- gaGCUUGUCGGCuAGCUUGAGCcGCU- -5'
6760 5' -53.6 NC_001875.2 + 82653 0.67 0.928649
Target:  5'- uUUGAAacguacaAGCUG-UCGuACUCGGCGAg -3'
miRNA:   3'- gAGCUUg------UCGGCuAGCuUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 73039 0.67 0.928649
Target:  5'- -gCGuGCAGCUGggCcAACUCGGCGc -3'
miRNA:   3'- gaGCuUGUCGGCuaGcUUGAGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.