miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 76904 0.71 0.388792
Target:  5'- -cGCAaaGGGGCGGCGCccaGCgacgacgagAGCGGCUccaGCg -3'
miRNA:   3'- caCGU--UCCCGCUGCG---CG---------UCGCCGA---CG- -5'
6762 3' -60.5 NC_001875.2 + 49344 0.71 0.37569
Target:  5'- cUGCAGcguGGGCGGCGggccguggugcaacaUGCGGCGGCgGUa -3'
miRNA:   3'- cACGUU---CCCGCUGC---------------GCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 21069 0.75 0.203718
Target:  5'- -gGCGuuuuGGGCaaaaGACGCGCGGCGGCgGUc -3'
miRNA:   3'- caCGUu---CCCG----CUGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 100141 0.78 0.136411
Target:  5'- aUGCGccGGCGGCGCGCaAGCGGCgGUc -3'
miRNA:   3'- cACGUucCCGCUGCGCG-UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 82364 0.69 0.467783
Target:  5'- uGUGCAAacucGGGCG-CGCGCGGaaccaCGGC-GCc -3'
miRNA:   3'- -CACGUU----CCCGCuGCGCGUC-----GCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 16885 0.7 0.405586
Target:  5'- uUGUAu--GCGuACGCGCAGCGGCgccGCg -3'
miRNA:   3'- cACGUuccCGC-UGCGCGUCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 100987 0.71 0.372462
Target:  5'- cUGCAGGccGCGGCGUuuGCGGCGGUuuUGCg -3'
miRNA:   3'- cACGUUCc-CGCUGCG--CGUCGCCG--ACG- -5'
6762 3' -60.5 NC_001875.2 + 23151 0.79 0.113928
Target:  5'- -cGCAgucgaAGGGCGGCuGCGggcaCGGCGGCUGCg -3'
miRNA:   3'- caCGU-----UCCCGCUG-CGC----GUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 31199 0.7 0.397132
Target:  5'- -gGUggGGGCuGACGCGCAc--GCUGCu -3'
miRNA:   3'- caCGuuCCCG-CUGCGCGUcgcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 73617 0.8 0.102685
Target:  5'- uUGCGGcGGCGGC-UGCGGCGGCUGCg -3'
miRNA:   3'- cACGUUcCCGCUGcGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 73778 0.71 0.372462
Target:  5'- -gGUAgaAGGGuUGugGCgGCGGCGGCUGg -3'
miRNA:   3'- caCGU--UCCC-GCugCG-CGUCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 72623 0.7 0.397132
Target:  5'- -aGCuu-GGCGACGUaaucgGCGGCGGcCUGCu -3'
miRNA:   3'- caCGuucCCGCUGCG-----CGUCGCC-GACG- -5'
6762 3' -60.5 NC_001875.2 + 101992 0.74 0.247166
Target:  5'- uGUGCAuuGcGGCG-UGCGCGGCGGCgGUg -3'
miRNA:   3'- -CACGUu-C-CCGCuGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 36425 0.75 0.203718
Target:  5'- -cGCGAGGccuuaccuuuGCGACGC-CGGCGcGCUGCg -3'
miRNA:   3'- caCGUUCC----------CGCUGCGcGUCGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 41343 0.77 0.167049
Target:  5'- cGUGCAAguGGGCcGCGCGCAguuugaacGCGcGCUGCa -3'
miRNA:   3'- -CACGUU--CCCGcUGCGCGU--------CGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 73689 0.78 0.143548
Target:  5'- cUGCugcGGCGGCuGCuGCGGCGGCUGCg -3'
miRNA:   3'- cACGuucCCGCUG-CG-CGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 43600 0.69 0.495905
Target:  5'- -gGCAGcGGCGGCGCGC-GCcGCUuGCg -3'
miRNA:   3'- caCGUUcCCGCUGCGCGuCGcCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 22578 0.69 0.477068
Target:  5'- -cGCccGGGcGCGGCGCGUuggccGGcCGGCUGUa -3'
miRNA:   3'- caCGu-UCC-CGCUGCGCG-----UC-GCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 102707 0.7 0.422828
Target:  5'- -gGCcAGGGCGAcaagaCGCGguGCuuuuGCUGCg -3'
miRNA:   3'- caCGuUCCCGCU-----GCGCguCGc---CGACG- -5'
6762 3' -60.5 NC_001875.2 + 113341 0.7 0.405586
Target:  5'- cGUGCGGcGGGU--CGgGC-GCGGCUGCg -3'
miRNA:   3'- -CACGUU-CCCGcuGCgCGuCGCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.