miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 62414 0.66 0.716566
Target:  5'- aUUGCguggGCAagcguuugCGCUGCGCC-GGCUgcaaggUCg -3'
miRNA:   3'- -AACGa---CGUg-------GCGACGCGGuCCGAa-----AG- -5'
6763 5' -58.6 NC_001875.2 + 43813 0.66 0.716566
Target:  5'- -gGCUGCugCGCggGCGUuugcgCGGGCg--- -3'
miRNA:   3'- aaCGACGugGCGa-CGCG-----GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 61598 0.66 0.716566
Target:  5'- -gGCUcggGCGCCgGCgGCGCUucGGGCUgugUCg -3'
miRNA:   3'- aaCGA---CGUGG-CGaCGCGG--UCCGAa--AG- -5'
6763 5' -58.6 NC_001875.2 + 102425 0.66 0.696064
Target:  5'- -cGCU-CGCCGUUgccgaGCGCCGGGUUggCg -3'
miRNA:   3'- aaCGAcGUGGCGA-----CGCGGUCCGAaaG- -5'
6763 5' -58.6 NC_001875.2 + 39109 0.66 0.696064
Target:  5'- cUGCUGCACCGgUuaGCUggcGGGCa--- -3'
miRNA:   3'- aACGACGUGGCgAcgCGG---UCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 125439 0.66 0.696064
Target:  5'- cUUGCUGUAcaaaaagauCCGC-GUGCCGGGCc--- -3'
miRNA:   3'- -AACGACGU---------GGCGaCGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 98601 0.66 0.696064
Target:  5'- -cGgaGCGCCGCgccgaaacgGCGCCcGGCg--- -3'
miRNA:   3'- aaCgaCGUGGCGa--------CGCGGuCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 11038 0.66 0.696064
Target:  5'- cUGCUGCGCCGuUUGCGCuuguuggauacCAGcGUUUUg -3'
miRNA:   3'- aACGACGUGGC-GACGCG-----------GUC-CGAAAg -5'
6763 5' -58.6 NC_001875.2 + 37386 0.66 0.695032
Target:  5'- -cGCUGCAguuuCCGCUGCcGCCGuucgaacGGCg--- -3'
miRNA:   3'- aaCGACGU----GGCGACG-CGGU-------CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 44543 0.66 0.685724
Target:  5'- -aGCgucGCGCgGC-GUGCCGGGCUg-- -3'
miRNA:   3'- aaCGa--CGUGgCGaCGCGGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 41442 0.66 0.675337
Target:  5'- -cGCUGCGCgCGCacagGCGCCGguugcGGCg--- -3'
miRNA:   3'- aaCGACGUG-GCGa---CGCGGU-----CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 57335 0.66 0.675337
Target:  5'- gUUGCgGCAgCGCUGCGCgC-GGCg--- -3'
miRNA:   3'- -AACGaCGUgGCGACGCG-GuCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 114953 0.66 0.674296
Target:  5'- -cGCgGCGCCGCUGCGCguacgcauacaacCAGGg---- -3'
miRNA:   3'- aaCGaCGUGGCGACGCG-------------GUCCgaaag -5'
6763 5' -58.6 NC_001875.2 + 129160 0.66 0.664913
Target:  5'- cUGCcgagGCGCCGCaguUGCcCCAGGCg--- -3'
miRNA:   3'- aACGa---CGUGGCG---ACGcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 114278 0.66 0.664913
Target:  5'- gUGCgGCAgCCGCUcGCGCCAacGGUUa-- -3'
miRNA:   3'- aACGaCGU-GGCGA-CGCGGU--CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 43112 0.66 0.664913
Target:  5'- uUUGCgGCagguuggaGCCGCcGCGCauccacugCAGGCUUUCc -3'
miRNA:   3'- -AACGaCG--------UGGCGaCGCG--------GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 77379 0.66 0.664913
Target:  5'- cUGCcGCACaCGCUgugcgGCGCCGcGGCUa-- -3'
miRNA:   3'- aACGaCGUG-GCGA-----CGCGGU-CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 124757 0.67 0.654461
Target:  5'- -cGCUGCAUguCUGCGCaCAGGCc--- -3'
miRNA:   3'- aaCGACGUGgcGACGCG-GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 73647 0.67 0.654461
Target:  5'- cUGCUGCgGCgGCUGCGgC-GGCUg-- -3'
miRNA:   3'- aACGACG-UGgCGACGCgGuCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 62995 0.67 0.654461
Target:  5'- -cGC-GCACCGCgUGCgacccguccGCCAGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCG-ACG---------CGGUCCGaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.