miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 5' -53.2 NC_001875.2 + 99589 0.66 0.97274
Target:  5'- --aGUGCGgGUUGUcgCGCCGguaugucugcgCGUUGGc -3'
miRNA:   3'- gaaCACGCgCAGUA--GCGGCa----------GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 43650 0.66 0.971039
Target:  5'- gUUGUGCGCGccguuggugcacgccUCGaccaugcaccguUUGCCGUCGUg-- -3'
miRNA:   3'- gAACACGCGC---------------AGU------------AGCGGCAGCAacc -5'
6764 5' -53.2 NC_001875.2 + 18559 0.66 0.969863
Target:  5'- --cGUGgGUGUCuugagCGCgcuuugCGUCGUUGGc -3'
miRNA:   3'- gaaCACgCGCAGua---GCG------GCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 32930 0.66 0.969863
Target:  5'- aCUUGgugaGCGCGUCAguuugcgCGCCGcUCGc--- -3'
miRNA:   3'- -GAACa---CGCGCAGUa------GCGGC-AGCaacc -5'
6764 5' -53.2 NC_001875.2 + 62575 0.66 0.966775
Target:  5'- -gUGUGCGUGUgCAUuaaccggcccgUGCCGUCGg--- -3'
miRNA:   3'- gaACACGCGCA-GUA-----------GCGGCAGCaacc -5'
6764 5' -53.2 NC_001875.2 + 64382 0.66 0.96347
Target:  5'- -gUGccgGCGCGUCAgcuuucagaCGCUGUUGcUGGg -3'
miRNA:   3'- gaACa--CGCGCAGUa--------GCGGCAGCaACC- -5'
6764 5' -53.2 NC_001875.2 + 102800 0.66 0.96347
Target:  5'- uCUUGaGCGCGUCGuuuagcccgUCGCCGcCGcaaaucgGGa -3'
miRNA:   3'- -GAACaCGCGCAGU---------AGCGGCaGCaa-----CC- -5'
6764 5' -53.2 NC_001875.2 + 125160 0.66 0.96347
Target:  5'- --cGUGCGcCGUCGUCGCCaa-GUUc- -3'
miRNA:   3'- gaaCACGC-GCAGUAGCGGcagCAAcc -5'
6764 5' -53.2 NC_001875.2 + 73375 0.66 0.96347
Target:  5'- --gGUGCGCuuguacugguuGUCGUCuUCGUCGUaaaUGGg -3'
miRNA:   3'- gaaCACGCG-----------CAGUAGcGGCAGCA---ACC- -5'
6764 5' -53.2 NC_001875.2 + 72730 0.66 0.959942
Target:  5'- ---uUGCGCGUCGgccagcgaCGCCGUCagccUGGa -3'
miRNA:   3'- gaacACGCGCAGUa-------GCGGCAGca--ACC- -5'
6764 5' -53.2 NC_001875.2 + 124413 0.67 0.956186
Target:  5'- ----gGCGCGcaGUUGCCcucGUCGUUGGg -3'
miRNA:   3'- gaacaCGCGCagUAGCGG---CAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 22503 0.67 0.956186
Target:  5'- cCUUGUuCGCGUCGUugacgcguuUGCCGUauUUGGu -3'
miRNA:   3'- -GAACAcGCGCAGUA---------GCGGCAgcAACC- -5'
6764 5' -53.2 NC_001875.2 + 78717 0.67 0.952198
Target:  5'- -gUGUGCGUGUCGUCGUCaaacUUGUg-- -3'
miRNA:   3'- gaACACGCGCAGUAGCGGc---AGCAacc -5'
6764 5' -53.2 NC_001875.2 + 102412 0.67 0.952198
Target:  5'- --cGUGUcgGCGUCGcgcUCGCCGUUgccgagcgccggGUUGGc -3'
miRNA:   3'- gaaCACG--CGCAGU---AGCGGCAG------------CAACC- -5'
6764 5' -53.2 NC_001875.2 + 37982 0.67 0.947973
Target:  5'- ---cUGCGCGcUCAgCGCCGacaacCGUUGGu -3'
miRNA:   3'- gaacACGCGC-AGUaGCGGCa----GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 94336 0.67 0.947973
Target:  5'- ----gGCGCGUCGUCcgcaCCGUCGccGGc -3'
miRNA:   3'- gaacaCGCGCAGUAGc---GGCAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 73056 0.67 0.943508
Target:  5'- --cGUuCGCGUCGaaaaagcgcaCGUCGUCGUUGGc -3'
miRNA:   3'- gaaCAcGCGCAGUa---------GCGGCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 96205 0.67 0.943508
Target:  5'- aCUUGcgcUGCGCcagauaGUCcgCGUCGgCGUUGGg -3'
miRNA:   3'- -GAAC---ACGCG------CAGuaGCGGCaGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 50003 0.67 0.9388
Target:  5'- gCUUGUcgcgguuggggcGCGCGUgGUCGCCGggCGgcGa -3'
miRNA:   3'- -GAACA------------CGCGCAgUAGCGGCa-GCaaCc -5'
6764 5' -53.2 NC_001875.2 + 36809 0.67 0.9388
Target:  5'- --gGUGCGCGUUAcgCGCCGcggcaGUUGc -3'
miRNA:   3'- gaaCACGCGCAGUa-GCGGCag---CAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.